Experiment: RB51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS03020 and ECOLIN_RS03025 are separated by 132 nucleotides ECOLIN_RS03025 and ECOLIN_RS03030 overlap by 4 nucleotides ECOLIN_RS03030 and ECOLIN_RS03035 are separated by 95 nucleotides
ECOLIN_RS03020: ECOLIN_RS03020 - carbamate kinase, at 624,356 to 625,249
_RS03020
ECOLIN_RS03025: ECOLIN_RS03025 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 625,382 to 626,449
_RS03025
ECOLIN_RS03030: ECOLIN_RS03030 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 626,446 to 626,955
_RS03030
ECOLIN_RS03035: ECOLIN_RS03035 - hypothetical protein, at 627,051 to 627,380
_RS03035
Position (kb) 625
626
627 Strain fitness (log2 ratio) -1
0
1 at 624.558 kb on + strand, within ECOLIN_RS03020 at 624.579 kb on + strand, within ECOLIN_RS03020 at 624.611 kb on + strand, within ECOLIN_RS03020 at 624.773 kb on + strand, within ECOLIN_RS03020 at 624.773 kb on + strand, within ECOLIN_RS03020 at 625.037 kb on + strand, within ECOLIN_RS03020 at 625.795 kb on - strand, within ECOLIN_RS03025 at 625.982 kb on + strand, within ECOLIN_RS03025 at 625.982 kb on + strand, within ECOLIN_RS03025 at 627.315 kb on - strand, within ECOLIN_RS03035 at 627.383 kb on + strand at 627.443 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RB51 remove 624,558 + ECOLIN_RS03020 0.23 +0.4 624,579 + ECOLIN_RS03020 0.25 +0.0 624,611 + ECOLIN_RS03020 0.29 -0.0 624,773 + ECOLIN_RS03020 0.47 -0.2 624,773 + ECOLIN_RS03020 0.47 -0.7 625,037 + ECOLIN_RS03020 0.76 +1.1 625,795 - ECOLIN_RS03025 0.39 +0.8 625,982 + ECOLIN_RS03025 0.56 +0.6 625,982 + ECOLIN_RS03025 0.56 -0.2 627,315 - ECOLIN_RS03035 0.80 -0.3 627,383 + -0.4 627,443 + +0.0
Or see this region's nucleotide sequence