Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS01010

Experiment: RB51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS01005 and ECOLIN_RS01010 are separated by 97 nucleotidesECOLIN_RS01010 and ECOLIN_RS01015 are separated by 56 nucleotidesECOLIN_RS01015 and ECOLIN_RS01020 are separated by 64 nucleotides ECOLIN_RS01005: ECOLIN_RS01005 - acetyl-CoA carboxylase carboxyl transferase subunit alpha, at 216,269 to 217,228 _RS01005 ECOLIN_RS01010: ECOLIN_RS01010 - lysine decarboxylase LdcC, at 217,326 to 219,467 _RS01010 ECOLIN_RS01015: ECOLIN_RS01015 - VOC family protein, at 219,524 to 219,913 _RS01015 ECOLIN_RS01020: ECOLIN_RS01020 - tRNA lysidine(34) synthetase TilS, at 219,978 to 221,291 _RS01020 Position (kb) 217 218 219 220Strain fitness (log2 ratio) -1 0 1at 218.802 kb on - strand, within ECOLIN_RS01010at 219.594 kb on - strand, within ECOLIN_RS01015

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Per-strain Table

Position Strand Gene LocusTag Fraction RB51
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218,802 - ECOLIN_RS01010 0.69 -0.5
219,594 - ECOLIN_RS01015 0.18 +0.0

Or see this region's nucleotide sequence