Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS13770

Experiment: RB51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS13765 and ECOLIN_RS13770 are separated by 206 nucleotidesECOLIN_RS13770 and ECOLIN_RS13775 are separated by 39 nucleotidesECOLIN_RS13775 and ECOLIN_RS13780 are separated by 220 nucleotidesECOLIN_RS13780 and ECOLIN_RS13785 are separated by 1 nucleotides ECOLIN_RS13765: ECOLIN_RS13765 - sensor domain-containing phosphodiesterase, at 2,768,744 to 2,770,933 _RS13765 ECOLIN_RS13770: ECOLIN_RS13770 - tRNA-Ala, at 2,771,140 to 2,771,215 _RS13770 ECOLIN_RS13775: ECOLIN_RS13775 - tRNA-Ala, at 2,771,255 to 2,771,330 _RS13775 ECOLIN_RS13780: ECOLIN_RS13780 - YfeC-like transcriptional regulator, at 2,771,551 to 2,771,910 _RS13780 ECOLIN_RS13785: ECOLIN_RS13785 - YfeC-like transcriptional regulator, at 2,771,912 to 2,772,304 _RS13785 Position (kb) 2771 2772Strain fitness (log2 ratio) -1 0 1at 2770.362 kb on - strand, within ECOLIN_RS13765at 2770.362 kb on - strand, within ECOLIN_RS13765

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Per-strain Table

Position Strand Gene LocusTag Fraction RB51
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2,770,362 - ECOLIN_RS13765 0.74 -0.3
2,770,362 - ECOLIN_RS13765 0.74 +0.8

Or see this region's nucleotide sequence