Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS11755

Experiment: RB51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS11745 and ECOLIN_RS33430 are separated by 331 nucleotidesECOLIN_RS33430 and ECOLIN_RS11755 are separated by 231 nucleotidesECOLIN_RS11755 and ECOLIN_RS30740 are separated by 195 nucleotidesECOLIN_RS30740 and ECOLIN_RS11765 are separated by 93 nucleotides ECOLIN_RS11745: ECOLIN_RS11745 - Hha/YmoA family nucleoid-associated regulatory protein, at 2,316,609 to 2,316,752 _RS11745 ECOLIN_RS33430: ECOLIN_RS33430 - hypothetical protein, at 2,317,084 to 2,317,317 _RS33430 ECOLIN_RS11755: ECOLIN_RS11755 - IS110-like element ISEc20 family transposase, at 2,317,549 to 2,318,745 _RS11755 ECOLIN_RS30740: ECOLIN_RS30740 - AlpA family phage regulatory protein, at 2,318,941 to 2,319,147 _RS30740 ECOLIN_RS11765: ECOLIN_RS11765 - hypothetical protein, at 2,319,241 to 2,319,850 _RS11765 Position (kb) 2317 2318 2319Strain fitness (log2 ratio) -1 0 1 2at 2318.551 kb on - strand, within ECOLIN_RS11755at 2318.621 kb on - strand, within ECOLIN_RS11755

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Per-strain Table

Position Strand Gene LocusTag Fraction RB51
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2,318,551 - ECOLIN_RS11755 0.84 +2.5
2,318,621 - ECOLIN_RS11755 0.90 +0.0

Or see this region's nucleotide sequence