Experiment: Bas51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS18110 and ECOLIN_RS18115 are separated by 72 nucleotides ECOLIN_RS18115 and ECOLIN_RS18120 are separated by 41 nucleotides ECOLIN_RS18120 and ECOLIN_RS18125 are separated by 50 nucleotides ECOLIN_RS18125 and ECOLIN_RS18130 overlap by 14 nucleotides
ECOLIN_RS18110: ECOLIN_RS18110 - permease, at 3,650,375 to 3,651,415
_RS18110
ECOLIN_RS18115: ECOLIN_RS18115 - NAD(P)H-binding protein, at 3,651,488 to 3,652,123
_RS18115
ECOLIN_RS18120: ECOLIN_RS18120 - YhbP family protein, at 3,652,165 to 3,652,587
_RS18120
ECOLIN_RS18125: ECOLIN_RS18125 - DNA damage response exodeoxyribonuclease YhbQ, at 3,652,638 to 3,652,940
_RS18125
ECOLIN_RS18130: ECOLIN_RS18130 - N-acetyltransferase, at 3,652,927 to 3,653,430
_RS18130
Position (kb) 3651
3652
3653 Strain fitness (log2 ratio) -1
0
1 at 3650.539 kb on + strand, within ECOLIN_RS18110 at 3651.041 kb on - strand, within ECOLIN_RS18110 at 3651.041 kb on - strand, within ECOLIN_RS18110 at 3651.257 kb on - strand, within ECOLIN_RS18110 at 3651.325 kb on - strand at 3651.432 kb on - strand at 3651.458 kb on - strand at 3651.758 kb on - strand, within ECOLIN_RS18115 at 3651.759 kb on + strand, within ECOLIN_RS18115 at 3651.760 kb on - strand, within ECOLIN_RS18115 at 3651.809 kb on - strand, within ECOLIN_RS18115 at 3651.809 kb on - strand, within ECOLIN_RS18115 at 3651.874 kb on + strand, within ECOLIN_RS18115 at 3652.058 kb on - strand, within ECOLIN_RS18115 at 3652.110 kb on - strand at 3652.145 kb on + strand at 3652.145 kb on + strand at 3652.162 kb on - strand at 3652.162 kb on - strand at 3652.162 kb on - strand at 3652.488 kb on - strand, within ECOLIN_RS18120 at 3652.602 kb on - strand at 3652.680 kb on - strand, within ECOLIN_RS18125 at 3653.003 kb on - strand, within ECOLIN_RS18130 at 3653.082 kb on - strand, within ECOLIN_RS18130
Per-strain Table
Position Strand Gene LocusTag Fraction Bas51 remove 3,650,539 + ECOLIN_RS18110 0.16 -0.2 3,651,041 - ECOLIN_RS18110 0.64 -0.2 3,651,041 - ECOLIN_RS18110 0.64 +0.4 3,651,257 - ECOLIN_RS18110 0.85 -0.1 3,651,325 - +0.3 3,651,432 - +0.0 3,651,458 - +0.1 3,651,758 - ECOLIN_RS18115 0.42 +0.2 3,651,759 + ECOLIN_RS18115 0.43 +0.2 3,651,760 - ECOLIN_RS18115 0.43 +0.3 3,651,809 - ECOLIN_RS18115 0.50 -0.0 3,651,809 - ECOLIN_RS18115 0.50 +0.6 3,651,874 + ECOLIN_RS18115 0.61 +0.6 3,652,058 - ECOLIN_RS18115 0.90 -0.0 3,652,110 - +0.3 3,652,145 + +0.4 3,652,145 + -0.5 3,652,162 - -0.2 3,652,162 - -0.0 3,652,162 - +0.2 3,652,488 - ECOLIN_RS18120 0.76 -0.5 3,652,602 - -0.5 3,652,680 - ECOLIN_RS18125 0.14 -0.1 3,653,003 - ECOLIN_RS18130 0.15 +0.3 3,653,082 - ECOLIN_RS18130 0.31 +0.4
Or see this region's nucleotide sequence