Experiment: Bas51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS00020 and ECOLIN_RS00030 are separated by 213 nucleotides ECOLIN_RS00030 and ECOLIN_RS00035 are separated by 59 nucleotides ECOLIN_RS00035 and ECOLIN_RS00040 are separated by 69 nucleotides
ECOLIN_RS00020: ECOLIN_RS00020 - threonine synthase, at 3,758 to 5,044
_RS00020
ECOLIN_RS00030: ECOLIN_RS00030 - DUF2502 domain-containing protein, at 5,258 to 5,554
_RS00030
ECOLIN_RS00035: ECOLIN_RS00035 - peroxide stress protein YaaA, at 5,614 to 6,390
_RS00035
ECOLIN_RS00040: ECOLIN_RS00040 - sodium:alanine symporter family protein, at 6,460 to 7,890
_RS00040
Position (kb) 5
6
7 Strain fitness (log2 ratio) -1
0
1 at 4.740 kb on - strand, within ECOLIN_RS00020 at 4.824 kb on + strand, within ECOLIN_RS00020 at 5.276 kb on - strand at 5.439 kb on - strand, within ECOLIN_RS00030 at 5.439 kb on - strand, within ECOLIN_RS00030 at 5.439 kb on - strand, within ECOLIN_RS00030 at 5.494 kb on + strand, within ECOLIN_RS00030 at 5.783 kb on - strand, within ECOLIN_RS00035 at 5.888 kb on - strand, within ECOLIN_RS00035 at 5.894 kb on - strand, within ECOLIN_RS00035 at 5.944 kb on - strand, within ECOLIN_RS00035 at 6.047 kb on + strand, within ECOLIN_RS00035 at 6.048 kb on - strand, within ECOLIN_RS00035 at 6.048 kb on - strand, within ECOLIN_RS00035 at 6.324 kb on + strand at 6.378 kb on + strand at 6.461 kb on + strand at 6.565 kb on + strand at 6.586 kb on - strand at 6.607 kb on + strand, within ECOLIN_RS00040 at 6.607 kb on + strand, within ECOLIN_RS00040 at 6.782 kb on + strand, within ECOLIN_RS00040 at 6.788 kb on + strand, within ECOLIN_RS00040 at 6.788 kb on + strand, within ECOLIN_RS00040 at 6.789 kb on - strand, within ECOLIN_RS00040 at 6.789 kb on - strand, within ECOLIN_RS00040 at 6.895 kb on - strand, within ECOLIN_RS00040 at 7.090 kb on - strand, within ECOLIN_RS00040 at 7.110 kb on + strand, within ECOLIN_RS00040 at 7.111 kb on - strand, within ECOLIN_RS00040 at 7.123 kb on + strand, within ECOLIN_RS00040 at 7.128 kb on + strand, within ECOLIN_RS00040 at 7.129 kb on - strand, within ECOLIN_RS00040 at 7.342 kb on - strand, within ECOLIN_RS00040 at 7.344 kb on + strand, within ECOLIN_RS00040 at 7.345 kb on - strand, within ECOLIN_RS00040
Per-strain Table
Position Strand Gene LocusTag Fraction Bas51 remove 4,740 - ECOLIN_RS00020 0.76 -0.6 4,824 + ECOLIN_RS00020 0.83 -0.3 5,276 - +0.6 5,439 - ECOLIN_RS00030 0.61 +1.5 5,439 - ECOLIN_RS00030 0.61 +0.1 5,439 - ECOLIN_RS00030 0.61 +0.1 5,494 + ECOLIN_RS00030 0.79 +0.1 5,783 - ECOLIN_RS00035 0.22 +0.2 5,888 - ECOLIN_RS00035 0.35 -0.1 5,894 - ECOLIN_RS00035 0.36 +0.2 5,944 - ECOLIN_RS00035 0.42 -1.4 6,047 + ECOLIN_RS00035 0.56 +0.4 6,048 - ECOLIN_RS00035 0.56 +0.5 6,048 - ECOLIN_RS00035 0.56 -0.6 6,324 + -0.5 6,378 + +0.6 6,461 + -0.3 6,565 + -0.7 6,586 - -0.4 6,607 + ECOLIN_RS00040 0.10 +1.5 6,607 + ECOLIN_RS00040 0.10 -0.3 6,782 + ECOLIN_RS00040 0.23 +0.8 6,788 + ECOLIN_RS00040 0.23 -0.7 6,788 + ECOLIN_RS00040 0.23 +0.4 6,789 - ECOLIN_RS00040 0.23 -0.9 6,789 - ECOLIN_RS00040 0.23 +0.1 6,895 - ECOLIN_RS00040 0.30 -0.3 7,090 - ECOLIN_RS00040 0.44 -0.9 7,110 + ECOLIN_RS00040 0.45 -0.2 7,111 - ECOLIN_RS00040 0.45 -0.5 7,123 + ECOLIN_RS00040 0.46 +0.7 7,128 + ECOLIN_RS00040 0.47 -0.6 7,129 - ECOLIN_RS00040 0.47 +0.1 7,342 - ECOLIN_RS00040 0.62 +0.1 7,344 + ECOLIN_RS00040 0.62 +0.4 7,345 - ECOLIN_RS00040 0.62 -0.1
Or see this region's nucleotide sequence