Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS17570 and ECOLIN_RS17575 are separated by 15 nucleotides ECOLIN_RS17575 and ECOLIN_RS17580 overlap by 4 nucleotides ECOLIN_RS17580 and ECOLIN_RS17585 are separated by 53 nucleotides
ECOLIN_RS17570: ECOLIN_RS17570 - fimbria/pilus outer membrane usher protein, at 3,538,974 to 3,541,496
_RS17570
ECOLIN_RS17575: ECOLIN_RS17575 - fimbria/pilus periplasmic chaperone, at 3,541,512 to 3,542,252
_RS17575
ECOLIN_RS17580: ECOLIN_RS17580 - pilus protein, at 3,542,249 to 3,543,298
_RS17580
ECOLIN_RS17585: ECOLIN_RS17585 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 3,543,352 to 3,544,005
_RS17585
Position (kb) 3542
3543
3544 Strain fitness (log2 ratio) -1
0
1 at 3541.298 kb on - strand at 3541.298 kb on - strand at 3541.366 kb on - strand at 3541.366 kb on - strand at 3541.402 kb on + strand at 3541.748 kb on + strand, within ECOLIN_RS17575 at 3541.803 kb on - strand, within ECOLIN_RS17575 at 3541.833 kb on + strand, within ECOLIN_RS17575 at 3541.836 kb on + strand, within ECOLIN_RS17575 at 3541.837 kb on - strand, within ECOLIN_RS17575 at 3542.199 kb on - strand at 3542.225 kb on + strand at 3542.269 kb on - strand at 3542.428 kb on + strand, within ECOLIN_RS17580 at 3543.063 kb on + strand, within ECOLIN_RS17580 at 3543.064 kb on - strand, within ECOLIN_RS17580 at 3543.065 kb on + strand, within ECOLIN_RS17580 at 3543.222 kb on + strand at 3543.276 kb on + strand at 3543.280 kb on + strand at 3543.341 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 3,541,298 - +0.6 3,541,298 - +0.9 3,541,366 - -0.1 3,541,366 - +0.6 3,541,402 + -0.1 3,541,748 + ECOLIN_RS17575 0.32 +0.0 3,541,803 - ECOLIN_RS17575 0.39 -1.0 3,541,833 + ECOLIN_RS17575 0.43 -0.6 3,541,836 + ECOLIN_RS17575 0.44 +0.4 3,541,837 - ECOLIN_RS17575 0.44 -0.1 3,542,199 - -0.6 3,542,225 + +0.3 3,542,269 - +0.5 3,542,428 + ECOLIN_RS17580 0.17 +1.5 3,543,063 + ECOLIN_RS17580 0.78 +1.2 3,543,064 - ECOLIN_RS17580 0.78 -0.0 3,543,065 + ECOLIN_RS17580 0.78 +1.2 3,543,222 + -0.3 3,543,276 + +0.6 3,543,280 + +0.1 3,543,341 - -0.3
Or see this region's nucleotide sequence