Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00161

Experiment: D-Xyl (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00160 and MPMX20_00161 are separated by 47 nucleotidesMPMX20_00161 and MPMX20_00162 are separated by 33 nucleotides MPMX20_00160: MPMX20_00160 - hypothetical protein, at 164,858 to 165,682 _00160 MPMX20_00161: MPMX20_00161 - Xylose operon regulatory protein, at 165,730 to 166,908 _00161 MPMX20_00162: MPMX20_00162 - Xylose transport system permease protein XylH, at 166,942 to 168,123 _00162 Position (kb) 165 166 167Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 164.757 kb on - strandat 164.816 kb on + strandat 164.826 kb on + strandat 164.834 kb on + strandat 164.842 kb on - strandat 164.842 kb on - strandat 164.842 kb on - strandat 164.862 kb on - strandat 164.881 kb on + strandat 164.894 kb on + strandat 164.924 kb on + strandat 164.951 kb on + strand, within MPMX20_00160at 164.991 kb on + strand, within MPMX20_00160at 164.991 kb on + strand, within MPMX20_00160at 164.991 kb on + strand, within MPMX20_00160at 164.991 kb on + strand, within MPMX20_00160at 164.991 kb on + strand, within MPMX20_00160at 164.991 kb on - strand, within MPMX20_00160at 164.998 kb on + strand, within MPMX20_00160at 164.998 kb on + strand, within MPMX20_00160at 164.999 kb on - strand, within MPMX20_00160at 164.999 kb on - strand, within MPMX20_00160at 164.999 kb on - strand, within MPMX20_00160at 164.999 kb on - strand, within MPMX20_00160at 165.006 kb on + strand, within MPMX20_00160at 165.006 kb on - strand, within MPMX20_00160at 165.037 kb on + strand, within MPMX20_00160at 165.045 kb on - strand, within MPMX20_00160at 165.045 kb on - strand, within MPMX20_00160at 165.045 kb on - strand, within MPMX20_00160at 165.047 kb on + strand, within MPMX20_00160at 165.105 kb on + strand, within MPMX20_00160at 165.113 kb on - strand, within MPMX20_00160at 165.113 kb on - strand, within MPMX20_00160at 165.113 kb on - strand, within MPMX20_00160at 165.209 kb on + strand, within MPMX20_00160at 165.232 kb on + strand, within MPMX20_00160at 165.281 kb on + strand, within MPMX20_00160at 165.281 kb on + strand, within MPMX20_00160at 165.281 kb on + strand, within MPMX20_00160at 165.281 kb on + strand, within MPMX20_00160at 165.281 kb on + strand, within MPMX20_00160at 165.305 kb on - strand, within MPMX20_00160at 165.310 kb on - strand, within MPMX20_00160at 165.312 kb on + strand, within MPMX20_00160at 165.352 kb on - strand, within MPMX20_00160at 165.439 kb on + strand, within MPMX20_00160at 165.442 kb on - strand, within MPMX20_00160at 165.442 kb on - strand, within MPMX20_00160at 165.449 kb on - strand, within MPMX20_00160at 165.511 kb on - strand, within MPMX20_00160at 165.554 kb on + strand, within MPMX20_00160at 165.589 kb on + strand, within MPMX20_00160at 165.610 kb on + strandat 165.611 kb on + strandat 165.611 kb on + strandat 165.643 kb on + strandat 165.701 kb on + strandat 165.753 kb on - strandat 165.765 kb on + strandat 165.778 kb on + strandat 165.778 kb on + strandat 165.786 kb on + strandat 165.794 kb on - strandat 165.794 kb on - strandat 165.794 kb on - strandat 165.794 kb on - strandat 165.827 kb on + strandat 165.827 kb on + strandat 165.830 kb on - strandat 165.835 kb on - strandat 165.835 kb on - strandat 165.863 kb on + strand, within MPMX20_00161at 165.952 kb on + strand, within MPMX20_00161at 165.982 kb on + strand, within MPMX20_00161at 165.988 kb on - strand, within MPMX20_00161at 165.998 kb on + strand, within MPMX20_00161at 166.006 kb on - strand, within MPMX20_00161at 166.087 kb on + strand, within MPMX20_00161at 166.095 kb on - strand, within MPMX20_00161at 166.095 kb on - strand, within MPMX20_00161at 166.106 kb on + strand, within MPMX20_00161at 166.114 kb on - strand, within MPMX20_00161at 166.190 kb on + strand, within MPMX20_00161at 166.190 kb on + strand, within MPMX20_00161at 166.190 kb on + strand, within MPMX20_00161at 166.198 kb on - strand, within MPMX20_00161at 166.198 kb on - strand, within MPMX20_00161at 166.198 kb on - strand, within MPMX20_00161at 166.198 kb on - strand, within MPMX20_00161at 166.237 kb on + strand, within MPMX20_00161at 166.242 kb on + strand, within MPMX20_00161at 166.291 kb on + strand, within MPMX20_00161at 166.299 kb on - strand, within MPMX20_00161at 166.299 kb on - strand, within MPMX20_00161at 166.299 kb on - strand, within MPMX20_00161at 166.299 kb on - strand, within MPMX20_00161at 166.299 kb on - strand, within MPMX20_00161at 166.381 kb on + strand, within MPMX20_00161at 166.424 kb on + strand, within MPMX20_00161at 166.492 kb on - strand, within MPMX20_00161at 166.497 kb on + strand, within MPMX20_00161at 166.510 kb on - strand, within MPMX20_00161at 166.548 kb on + strand, within MPMX20_00161at 166.583 kb on + strand, within MPMX20_00161at 166.583 kb on + strand, within MPMX20_00161at 166.583 kb on + strand, within MPMX20_00161at 166.583 kb on + strand, within MPMX20_00161at 166.591 kb on - strand, within MPMX20_00161at 166.591 kb on - strand, within MPMX20_00161at 166.591 kb on - strand, within MPMX20_00161at 166.591 kb on - strand, within MPMX20_00161at 166.612 kb on + strand, within MPMX20_00161at 166.618 kb on - strand, within MPMX20_00161at 166.633 kb on + strand, within MPMX20_00161at 166.729 kb on + strand, within MPMX20_00161at 166.732 kb on - strand, within MPMX20_00161at 166.748 kb on + strand, within MPMX20_00161at 166.756 kb on - strand, within MPMX20_00161at 166.769 kb on + strand, within MPMX20_00161at 166.843 kb on - strandat 166.843 kb on - strandat 166.845 kb on + strandat 166.845 kb on + strandat 166.847 kb on - strandat 166.852 kb on + strandat 166.852 kb on + strandat 166.852 kb on + strandat 166.853 kb on - strandat 166.859 kb on + strandat 166.860 kb on - strandat 166.860 kb on - strandat 166.860 kb on - strandat 166.860 kb on - strandat 166.860 kb on - strandat 166.867 kb on - strandat 166.876 kb on - strandat 166.969 kb on + strandat 166.972 kb on - strandat 166.977 kb on - strandat 167.053 kb on - strandat 167.106 kb on - strand, within MPMX20_00162at 167.162 kb on - strand, within MPMX20_00162at 167.172 kb on - strand, within MPMX20_00162at 167.172 kb on - strand, within MPMX20_00162at 167.270 kb on + strand, within MPMX20_00162at 167.278 kb on - strand, within MPMX20_00162at 167.278 kb on - strand, within MPMX20_00162at 167.294 kb on + strand, within MPMX20_00162at 167.294 kb on + strand, within MPMX20_00162at 167.294 kb on + strand, within MPMX20_00162at 167.294 kb on + strand, within MPMX20_00162at 167.294 kb on + strand, within MPMX20_00162at 167.294 kb on + strand, within MPMX20_00162at 167.294 kb on + strand, within MPMX20_00162at 167.302 kb on - strand, within MPMX20_00162at 167.302 kb on - strand, within MPMX20_00162at 167.302 kb on - strand, within MPMX20_00162at 167.302 kb on - strand, within MPMX20_00162at 167.302 kb on - strand, within MPMX20_00162at 167.302 kb on - strand, within MPMX20_00162at 167.348 kb on + strand, within MPMX20_00162at 167.356 kb on - strand, within MPMX20_00162at 167.460 kb on + strand, within MPMX20_00162at 167.565 kb on - strand, within MPMX20_00162at 167.594 kb on + strand, within MPMX20_00162at 167.602 kb on - strand, within MPMX20_00162at 167.610 kb on - strand, within MPMX20_00162at 167.629 kb on + strand, within MPMX20_00162at 167.634 kb on + strand, within MPMX20_00162at 167.636 kb on - strand, within MPMX20_00162at 167.636 kb on - strand, within MPMX20_00162at 167.733 kb on + strand, within MPMX20_00162at 167.733 kb on + strand, within MPMX20_00162at 167.743 kb on + strand, within MPMX20_00162at 167.761 kb on - strand, within MPMX20_00162at 167.837 kb on + strand, within MPMX20_00162at 167.850 kb on - strand, within MPMX20_00162

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Xyl (C)
remove
164,757 - -2.9
164,816 + +0.1
164,826 + +0.1
164,834 + +0.1
164,842 - -1.6
164,842 - -1.2
164,842 - +0.8
164,862 - -2.1
164,881 + +1.4
164,894 + -1.4
164,924 + +0.1
164,951 + MPMX20_00160 0.11 -0.4
164,991 + MPMX20_00160 0.16 -0.4
164,991 + MPMX20_00160 0.16 -1.4
164,991 + MPMX20_00160 0.16 +0.5
164,991 + MPMX20_00160 0.16 +1.1
164,991 + MPMX20_00160 0.16 -0.6
164,991 - MPMX20_00160 0.16 +1.0
164,998 + MPMX20_00160 0.17 +2.5
164,998 + MPMX20_00160 0.17 +0.7
164,999 - MPMX20_00160 0.17 +0.7
164,999 - MPMX20_00160 0.17 -0.2
164,999 - MPMX20_00160 0.17 +0.0
164,999 - MPMX20_00160 0.17 +0.1
165,006 + MPMX20_00160 0.18 -0.1
165,006 - MPMX20_00160 0.18 +1.0
165,037 + MPMX20_00160 0.22 -4.1
165,045 - MPMX20_00160 0.23 -0.8
165,045 - MPMX20_00160 0.23 -0.4
165,045 - MPMX20_00160 0.23 -1.5
165,047 + MPMX20_00160 0.23 +0.3
165,105 + MPMX20_00160 0.30 -0.1
165,113 - MPMX20_00160 0.31 -0.6
165,113 - MPMX20_00160 0.31 -1.6
165,113 - MPMX20_00160 0.31 -0.6
165,209 + MPMX20_00160 0.43 -0.1
165,232 + MPMX20_00160 0.45 -0.4
165,281 + MPMX20_00160 0.51 -0.2
165,281 + MPMX20_00160 0.51 -0.4
165,281 + MPMX20_00160 0.51 -0.3
165,281 + MPMX20_00160 0.51 +1.1
165,281 + MPMX20_00160 0.51 -1.0
165,305 - MPMX20_00160 0.54 -2.3
165,310 - MPMX20_00160 0.55 -1.5
165,312 + MPMX20_00160 0.55 -0.5
165,352 - MPMX20_00160 0.60 +0.7
165,439 + MPMX20_00160 0.70 +0.7
165,442 - MPMX20_00160 0.71 -1.0
165,442 - MPMX20_00160 0.71 -2.0
165,449 - MPMX20_00160 0.72 +0.8
165,511 - MPMX20_00160 0.79 -0.4
165,554 + MPMX20_00160 0.84 -0.5
165,589 + MPMX20_00160 0.89 -0.7
165,610 + +1.8
165,611 + +0.3
165,611 + -0.6
165,643 + +1.2
165,701 + -0.0
165,753 - -4.7
165,765 + -5.3
165,778 + -0.5
165,778 + -4.7
165,786 + -4.3
165,794 - -5.5
165,794 - -5.7
165,794 - -3.9
165,794 - -1.3
165,827 + -3.8
165,827 + -3.6
165,830 - -3.6
165,835 - -2.8
165,835 - -2.5
165,863 + MPMX20_00161 0.11 -1.5
165,952 + MPMX20_00161 0.19 -4.3
165,982 + MPMX20_00161 0.21 -3.1
165,988 - MPMX20_00161 0.22 -1.6
165,998 + MPMX20_00161 0.23 -4.3
166,006 - MPMX20_00161 0.23 -2.9
166,087 + MPMX20_00161 0.30 -2.2
166,095 - MPMX20_00161 0.31 -1.8
166,095 - MPMX20_00161 0.31 -4.7
166,106 + MPMX20_00161 0.32 -1.9
166,114 - MPMX20_00161 0.33 -0.7
166,190 + MPMX20_00161 0.39 -5.5
166,190 + MPMX20_00161 0.39 -4.5
166,190 + MPMX20_00161 0.39 -2.8
166,198 - MPMX20_00161 0.40 -5.3
166,198 - MPMX20_00161 0.40 -3.2
166,198 - MPMX20_00161 0.40 -3.9
166,198 - MPMX20_00161 0.40 -2.5
166,237 + MPMX20_00161 0.43 -4.9
166,242 + MPMX20_00161 0.43 -3.4
166,291 + MPMX20_00161 0.48 -3.8
166,299 - MPMX20_00161 0.48 -4.8
166,299 - MPMX20_00161 0.48 -4.0
166,299 - MPMX20_00161 0.48 -2.0
166,299 - MPMX20_00161 0.48 -2.8
166,299 - MPMX20_00161 0.48 -4.7
166,381 + MPMX20_00161 0.55 -3.8
166,424 + MPMX20_00161 0.59 -2.6
166,492 - MPMX20_00161 0.65 -2.2
166,497 + MPMX20_00161 0.65 -4.2
166,510 - MPMX20_00161 0.66 -5.4
166,548 + MPMX20_00161 0.69 -3.8
166,583 + MPMX20_00161 0.72 -2.3
166,583 + MPMX20_00161 0.72 -2.8
166,583 + MPMX20_00161 0.72 -5.1
166,583 + MPMX20_00161 0.72 -1.5
166,591 - MPMX20_00161 0.73 -4.4
166,591 - MPMX20_00161 0.73 -2.5
166,591 - MPMX20_00161 0.73 -3.5
166,591 - MPMX20_00161 0.73 +2.1
166,612 + MPMX20_00161 0.75 -2.3
166,618 - MPMX20_00161 0.75 -2.5
166,633 + MPMX20_00161 0.77 -3.9
166,729 + MPMX20_00161 0.85 -5.4
166,732 - MPMX20_00161 0.85 -2.4
166,748 + MPMX20_00161 0.86 -1.0
166,756 - MPMX20_00161 0.87 -4.7
166,769 + MPMX20_00161 0.88 -2.4
166,843 - -4.9
166,843 - +1.1
166,845 + -1.8
166,845 + -3.2
166,847 - -2.7
166,852 + -4.9
166,852 + -5.0
166,852 + -4.6
166,853 - -0.7
166,859 + -3.7
166,860 - +0.1
166,860 - -2.0
166,860 - -1.2
166,860 - -5.0
166,860 - -3.4
166,867 - -2.6
166,876 - -2.0
166,969 + -3.6
166,972 - -3.8
166,977 - -0.8
167,053 - -2.5
167,106 - MPMX20_00162 0.14 -1.7
167,162 - MPMX20_00162 0.19 -0.8
167,172 - MPMX20_00162 0.19 -0.9
167,172 - MPMX20_00162 0.19 +0.0
167,270 + MPMX20_00162 0.28 -3.2
167,278 - MPMX20_00162 0.28 +0.4
167,278 - MPMX20_00162 0.28 -0.6
167,294 + MPMX20_00162 0.30 -2.8
167,294 + MPMX20_00162 0.30 +0.7
167,294 + MPMX20_00162 0.30 -3.5
167,294 + MPMX20_00162 0.30 -1.8
167,294 + MPMX20_00162 0.30 -1.6
167,294 + MPMX20_00162 0.30 -2.2
167,294 + MPMX20_00162 0.30 -0.4
167,302 - MPMX20_00162 0.30 -1.1
167,302 - MPMX20_00162 0.30 -0.5
167,302 - MPMX20_00162 0.30 +0.4
167,302 - MPMX20_00162 0.30 -1.3
167,302 - MPMX20_00162 0.30 -1.1
167,302 - MPMX20_00162 0.30 -0.9
167,348 + MPMX20_00162 0.34 -1.5
167,356 - MPMX20_00162 0.35 -3.1
167,460 + MPMX20_00162 0.44 +2.1
167,565 - MPMX20_00162 0.53 -0.0
167,594 + MPMX20_00162 0.55 -2.9
167,602 - MPMX20_00162 0.56 -1.0
167,610 - MPMX20_00162 0.57 -1.6
167,629 + MPMX20_00162 0.58 -3.6
167,634 + MPMX20_00162 0.59 -1.3
167,636 - MPMX20_00162 0.59 -0.2
167,636 - MPMX20_00162 0.59 -1.3
167,733 + MPMX20_00162 0.67 -2.9
167,733 + MPMX20_00162 0.67 -1.0
167,743 + MPMX20_00162 0.68 -3.1
167,761 - MPMX20_00162 0.69 -1.4
167,837 + MPMX20_00162 0.76 -3.4
167,850 - MPMX20_00162 0.77 -1.8

Or see this region's nucleotide sequence