Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS25090 and ECOLIN_RS25095 are separated by 102 nucleotides ECOLIN_RS25095 and ECOLIN_RS25100 overlap by 32 nucleotides ECOLIN_RS25100 and ECOLIN_RS25105 are separated by 14 nucleotides ECOLIN_RS25105 and ECOLIN_RS25110 are separated by 90 nucleotides
ECOLIN_RS25090: ECOLIN_RS25090 - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 5,043,415 to 5,044,446
_RS25090
ECOLIN_RS25095: ECOLIN_RS25095 - DNA polymerase III subunit psi, at 5,044,549 to 5,044,962
_RS25095
ECOLIN_RS25100: ECOLIN_RS25100 - ribosomal protein S18-alanine N-acetyltransferase, at 5,044,931 to 5,045,377
_RS25100
ECOLIN_RS25105: ECOLIN_RS25105 - pyrimidine 5'-nucleotidase, at 5,045,392 to 5,046,069
_RS25105
ECOLIN_RS25110: ECOLIN_RS25110 - peptide chain release factor 3, at 5,046,160 to 5,047,749
_RS25110
Position (kb) 5044
5045
5046 Strain fitness (log2 ratio) -1
0
1
2 at 5043.992 kb on - strand, within ECOLIN_RS25090 at 5044.020 kb on - strand, within ECOLIN_RS25090 at 5044.202 kb on + strand, within ECOLIN_RS25090 at 5044.203 kb on - strand, within ECOLIN_RS25090 at 5044.203 kb on - strand, within ECOLIN_RS25090 at 5044.282 kb on + strand, within ECOLIN_RS25090 at 5044.283 kb on - strand, within ECOLIN_RS25090 at 5044.286 kb on - strand, within ECOLIN_RS25090 at 5044.336 kb on + strand, within ECOLIN_RS25090 at 5044.336 kb on + strand, within ECOLIN_RS25090 at 5044.380 kb on + strand at 5044.465 kb on + strand at 5044.486 kb on + strand at 5044.487 kb on - strand at 5044.931 kb on - strand at 5044.931 kb on - strand at 5045.123 kb on - strand, within ECOLIN_RS25100 at 5045.315 kb on + strand, within ECOLIN_RS25100 at 5045.316 kb on - strand, within ECOLIN_RS25100 at 5045.316 kb on - strand, within ECOLIN_RS25100 at 5045.316 kb on - strand, within ECOLIN_RS25100 at 5045.371 kb on + strand at 5045.372 kb on - strand at 5045.574 kb on - strand, within ECOLIN_RS25105 at 5046.060 kb on + strand at 5046.159 kb on + strand at 5046.159 kb on + strand at 5046.159 kb on + strand at 5046.176 kb on - strand at 5046.240 kb on + strand at 5046.297 kb on - strand at 5046.297 kb on - strand at 5046.325 kb on - strand, within ECOLIN_RS25110 at 5046.373 kb on - strand, within ECOLIN_RS25110 at 5046.373 kb on - strand, within ECOLIN_RS25110
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 5,043,992 - ECOLIN_RS25090 0.56 -0.3 5,044,020 - ECOLIN_RS25090 0.59 +0.5 5,044,202 + ECOLIN_RS25090 0.76 -0.7 5,044,203 - ECOLIN_RS25090 0.76 -0.2 5,044,203 - ECOLIN_RS25090 0.76 +0.2 5,044,282 + ECOLIN_RS25090 0.84 -0.6 5,044,283 - ECOLIN_RS25090 0.84 +0.1 5,044,286 - ECOLIN_RS25090 0.84 -0.6 5,044,336 + ECOLIN_RS25090 0.89 -0.5 5,044,336 + ECOLIN_RS25090 0.89 -0.5 5,044,380 + -0.1 5,044,465 + -0.7 5,044,486 + +0.7 5,044,487 - -0.3 5,044,931 - +0.0 5,044,931 - -0.0 5,045,123 - ECOLIN_RS25100 0.43 -0.1 5,045,315 + ECOLIN_RS25100 0.86 -0.2 5,045,316 - ECOLIN_RS25100 0.86 +2.1 5,045,316 - ECOLIN_RS25100 0.86 +0.0 5,045,316 - ECOLIN_RS25100 0.86 -0.3 5,045,371 + +1.9 5,045,372 - +0.3 5,045,574 - ECOLIN_RS25105 0.27 -1.0 5,046,060 + +0.2 5,046,159 + -0.8 5,046,159 + +0.1 5,046,159 + -0.8 5,046,176 - -0.3 5,046,240 + -0.4 5,046,297 - +0.3 5,046,297 - -0.7 5,046,325 - ECOLIN_RS25110 0.10 -1.0 5,046,373 - ECOLIN_RS25110 0.13 +1.6 5,046,373 - ECOLIN_RS25110 0.13 +0.1
Or see this region's nucleotide sequence