Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS25060 and ECOLIN_RS25065 are separated by 140 nucleotides ECOLIN_RS25065 and ECOLIN_RS25070 are separated by 38 nucleotides ECOLIN_RS25070 and ECOLIN_RS25075 are separated by 34 nucleotides ECOLIN_RS25075 and ECOLIN_RS25080 are separated by 28 nucleotides ECOLIN_RS25080 and ECOLIN_RS25090 are separated by 290 nucleotides
ECOLIN_RS25060: ECOLIN_RS25060 - siderophore-iron reductase FhuF, at 5,041,598 to 5,042,386
_RS25060
ECOLIN_RS25065: ECOLIN_RS25065 - DUF1435 domain-containing protein, at 5,042,527 to 5,042,763
_RS25065
ECOLIN_RS25070: ECOLIN_RS25070 - tRNA-Leu, at 5,042,802 to 5,042,888
_RS25070
ECOLIN_RS25075: ECOLIN_RS25075 - tRNA-Leu, at 5,042,923 to 5,043,009
_RS25075
ECOLIN_RS25080: ECOLIN_RS25080 - tRNA-Leu, at 5,043,038 to 5,043,124
_RS25080
ECOLIN_RS25090: ECOLIN_RS25090 - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 5,043,415 to 5,044,446
_RS25090
Position (kb) 5043
5044 Strain fitness (log2 ratio) -1
0
1 at 5042.900 kb on - strand at 5043.198 kb on + strand at 5043.216 kb on + strand at 5043.263 kb on - strand at 5043.339 kb on - strand at 5043.370 kb on + strand at 5043.371 kb on - strand at 5043.542 kb on - strand, within ECOLIN_RS25090 at 5043.567 kb on + strand, within ECOLIN_RS25090 at 5043.883 kb on + strand, within ECOLIN_RS25090 at 5043.992 kb on - strand, within ECOLIN_RS25090 at 5044.020 kb on - strand, within ECOLIN_RS25090
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 5,042,900 - -0.3 5,043,198 + +1.1 5,043,216 + -0.2 5,043,263 - -0.6 5,043,339 - +0.6 5,043,370 + -0.1 5,043,371 - -0.5 5,043,542 - ECOLIN_RS25090 0.12 -1.0 5,043,567 + ECOLIN_RS25090 0.15 -0.4 5,043,883 + ECOLIN_RS25090 0.45 +0.4 5,043,992 - ECOLIN_RS25090 0.56 -0.3 5,044,020 - ECOLIN_RS25090 0.59 +0.5
Or see this region's nucleotide sequence