Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS23780 and ECOLIN_RS23785 overlap by 4 nucleotides ECOLIN_RS23785 and ECOLIN_RS23790 are separated by 263 nucleotides
ECOLIN_RS23780: ECOLIN_RS23780 - clamp-binding protein CrfC, at 4,792,850 to 4,795,078
_RS23780
ECOLIN_RS23785: ECOLIN_RS23785 - YjcZ-like family protein, at 4,795,075 to 4,795,953
_RS23785
ECOLIN_RS23790: ECOLIN_RS23790 - glycine betaine/L-proline transporter ProP, at 4,796,217 to 4,797,719
_RS23790
Position (kb) 4795
4796 Strain fitness (log2 ratio) -1
0
1
2
3 at 4794.098 kb on + strand, within ECOLIN_RS23780 at 4794.099 kb on - strand, within ECOLIN_RS23780 at 4794.099 kb on - strand, within ECOLIN_RS23780 at 4794.134 kb on + strand, within ECOLIN_RS23780 at 4794.135 kb on - strand, within ECOLIN_RS23780 at 4794.240 kb on + strand, within ECOLIN_RS23780 at 4794.508 kb on + strand, within ECOLIN_RS23780 at 4794.509 kb on - strand, within ECOLIN_RS23780 at 4794.595 kb on - strand, within ECOLIN_RS23780 at 4794.764 kb on + strand, within ECOLIN_RS23780 at 4794.857 kb on - strand at 4794.871 kb on + strand at 4795.036 kb on - strand at 4795.137 kb on - strand at 4795.262 kb on + strand, within ECOLIN_RS23785 at 4795.432 kb on + strand, within ECOLIN_RS23785 at 4795.432 kb on + strand, within ECOLIN_RS23785 at 4795.433 kb on - strand, within ECOLIN_RS23785 at 4795.433 kb on - strand, within ECOLIN_RS23785 at 4795.550 kb on - strand, within ECOLIN_RS23785 at 4795.732 kb on + strand, within ECOLIN_RS23785 at 4795.733 kb on - strand, within ECOLIN_RS23785 at 4795.735 kb on + strand, within ECOLIN_RS23785 at 4795.735 kb on + strand, within ECOLIN_RS23785 at 4795.735 kb on + strand, within ECOLIN_RS23785 at 4795.736 kb on - strand, within ECOLIN_RS23785 at 4795.963 kb on + strand at 4795.963 kb on + strand at 4796.040 kb on + strand at 4796.217 kb on - strand at 4796.280 kb on - strand at 4796.493 kb on + strand, within ECOLIN_RS23790 at 4796.532 kb on - strand, within ECOLIN_RS23790 at 4796.532 kb on - strand, within ECOLIN_RS23790 at 4796.651 kb on + strand, within ECOLIN_RS23790 at 4796.665 kb on + strand, within ECOLIN_RS23790 at 4796.666 kb on - strand, within ECOLIN_RS23790 at 4796.694 kb on - strand, within ECOLIN_RS23790
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 4,794,098 + ECOLIN_RS23780 0.56 -0.4 4,794,099 - ECOLIN_RS23780 0.56 +0.5 4,794,099 - ECOLIN_RS23780 0.56 -1.2 4,794,134 + ECOLIN_RS23780 0.58 +0.4 4,794,135 - ECOLIN_RS23780 0.58 -0.3 4,794,240 + ECOLIN_RS23780 0.62 -0.2 4,794,508 + ECOLIN_RS23780 0.74 +0.4 4,794,509 - ECOLIN_RS23780 0.74 -0.0 4,794,595 - ECOLIN_RS23780 0.78 -0.6 4,794,764 + ECOLIN_RS23780 0.86 +0.7 4,794,857 - +0.1 4,794,871 + +0.1 4,795,036 - -0.5 4,795,137 - +2.4 4,795,262 + ECOLIN_RS23785 0.21 -0.2 4,795,432 + ECOLIN_RS23785 0.41 -0.2 4,795,432 + ECOLIN_RS23785 0.41 +0.3 4,795,433 - ECOLIN_RS23785 0.41 -0.1 4,795,433 - ECOLIN_RS23785 0.41 -0.2 4,795,550 - ECOLIN_RS23785 0.54 +0.1 4,795,732 + ECOLIN_RS23785 0.75 -0.3 4,795,733 - ECOLIN_RS23785 0.75 -0.2 4,795,735 + ECOLIN_RS23785 0.75 -0.1 4,795,735 + ECOLIN_RS23785 0.75 +0.0 4,795,735 + ECOLIN_RS23785 0.75 -0.7 4,795,736 - ECOLIN_RS23785 0.75 -0.2 4,795,963 + -0.5 4,795,963 + -0.8 4,796,040 + -0.2 4,796,217 - +0.1 4,796,280 - +1.1 4,796,493 + ECOLIN_RS23790 0.18 -0.6 4,796,532 - ECOLIN_RS23790 0.21 +3.0 4,796,532 - ECOLIN_RS23790 0.21 -0.4 4,796,651 + ECOLIN_RS23790 0.29 +0.3 4,796,665 + ECOLIN_RS23790 0.30 +0.1 4,796,666 - ECOLIN_RS23790 0.30 +0.1 4,796,694 - ECOLIN_RS23790 0.32 -0.3
Or see this region's nucleotide sequence