Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS22315 and ECOLIN_RS22320 are separated by 217 nucleotides ECOLIN_RS22320 and ECOLIN_RS22325 are separated by 7 nucleotides ECOLIN_RS22325 and ECOLIN_RS22330 are separated by 101 nucleotides
ECOLIN_RS22315: ECOLIN_RS22315 - ribosome-dependent GTPase TypA, at 4,485,036 to 4,486,859
_RS22315
ECOLIN_RS22320: ECOLIN_RS22320 - GntR family transcriptional regulator, at 4,487,077 to 4,487,787
_RS22320
ECOLIN_RS22325: ECOLIN_RS22325 - TIM barrel protein, at 4,487,795 to 4,488,775
_RS22325
ECOLIN_RS22330: ECOLIN_RS22330 - MFS transporter, at 4,488,877 to 4,490,142
_RS22330
Position (kb) 4487
4488
4489 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 4486.799 kb on + strand at 4486.870 kb on + strand at 4486.939 kb on + strand at 4486.950 kb on + strand at 4486.950 kb on + strand at 4486.951 kb on - strand at 4486.989 kb on + strand at 4486.989 kb on + strand at 4486.990 kb on - strand at 4487.209 kb on - strand, within ECOLIN_RS22320 at 4487.209 kb on - strand, within ECOLIN_RS22320 at 4487.209 kb on - strand, within ECOLIN_RS22320 at 4487.301 kb on + strand, within ECOLIN_RS22320 at 4487.452 kb on + strand, within ECOLIN_RS22320 at 4487.488 kb on - strand, within ECOLIN_RS22320 at 4487.509 kb on + strand, within ECOLIN_RS22320 at 4487.510 kb on - strand, within ECOLIN_RS22320 at 4487.512 kb on - strand, within ECOLIN_RS22320 at 4487.992 kb on + strand, within ECOLIN_RS22325 at 4488.172 kb on - strand, within ECOLIN_RS22325 at 4488.201 kb on - strand, within ECOLIN_RS22325 at 4488.545 kb on + strand, within ECOLIN_RS22325 at 4488.573 kb on - strand, within ECOLIN_RS22325 at 4489.344 kb on - strand, within ECOLIN_RS22330 at 4489.347 kb on + strand, within ECOLIN_RS22330 at 4489.396 kb on + strand, within ECOLIN_RS22330 at 4489.589 kb on + strand, within ECOLIN_RS22330 at 4489.590 kb on - strand, within ECOLIN_RS22330 at 4489.621 kb on + strand, within ECOLIN_RS22330 at 4489.622 kb on - strand, within ECOLIN_RS22330 at 4489.745 kb on + strand, within ECOLIN_RS22330 at 4489.746 kb on - strand, within ECOLIN_RS22330 at 4489.751 kb on - strand, within ECOLIN_RS22330
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 4,486,799 + -0.2 4,486,870 + +0.3 4,486,939 + +0.2 4,486,950 + +0.3 4,486,950 + +0.1 4,486,951 - +0.0 4,486,989 + -0.3 4,486,989 + -0.1 4,486,990 - -0.1 4,487,209 - ECOLIN_RS22320 0.19 +1.5 4,487,209 - ECOLIN_RS22320 0.19 +0.4 4,487,209 - ECOLIN_RS22320 0.19 +1.6 4,487,301 + ECOLIN_RS22320 0.32 -0.0 4,487,452 + ECOLIN_RS22320 0.53 +0.8 4,487,488 - ECOLIN_RS22320 0.58 +1.5 4,487,509 + ECOLIN_RS22320 0.61 -0.5 4,487,510 - ECOLIN_RS22320 0.61 -0.2 4,487,512 - ECOLIN_RS22320 0.61 +1.1 4,487,992 + ECOLIN_RS22325 0.20 +0.1 4,488,172 - ECOLIN_RS22325 0.38 -1.4 4,488,201 - ECOLIN_RS22325 0.41 +4.2 4,488,545 + ECOLIN_RS22325 0.76 +0.5 4,488,573 - ECOLIN_RS22325 0.79 +0.0 4,489,344 - ECOLIN_RS22330 0.37 +0.0 4,489,347 + ECOLIN_RS22330 0.37 -0.3 4,489,396 + ECOLIN_RS22330 0.41 +0.3 4,489,589 + ECOLIN_RS22330 0.56 -0.2 4,489,590 - ECOLIN_RS22330 0.56 +0.0 4,489,621 + ECOLIN_RS22330 0.59 -0.2 4,489,622 - ECOLIN_RS22330 0.59 -1.0 4,489,745 + ECOLIN_RS22330 0.69 -0.1 4,489,746 - ECOLIN_RS22330 0.69 +0.2 4,489,751 - ECOLIN_RS22330 0.69 +0.3
Or see this region's nucleotide sequence