Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS18050

Experiment: K25

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS18040 and ECOLIN_RS18045 are separated by 17 nucleotidesECOLIN_RS18045 and ECOLIN_RS18050 overlap by 4 nucleotidesECOLIN_RS18050 and ECOLIN_RS18055 are separated by 348 nucleotides ECOLIN_RS18040: ECOLIN_RS18040 - PTS N-acetylgalactosamine transporter subunit IID, at 3,637,829 to 3,638,707 _RS18040 ECOLIN_RS18045: ECOLIN_RS18045 - PTS galactosamine/N-acetylgalactosamine transporter subunit IIA, at 3,638,725 to 3,639,159 _RS18045 ECOLIN_RS18050: ECOLIN_RS18050 - N-acetylglucosamine-6-phosphate deacetylase, at 3,639,156 to 3,640,289 _RS18050 ECOLIN_RS18055: ECOLIN_RS18055 - AgaS family sugar isomerase, at 3,640,638 to 3,641,792 _RS18055 Position (kb) 3639 3640 3641Strain fitness (log2 ratio) -1 0 1at 3638.171 kb on - strand, within ECOLIN_RS18040at 3638.259 kb on + strand, within ECOLIN_RS18040at 3638.298 kb on + strand, within ECOLIN_RS18040at 3638.455 kb on + strand, within ECOLIN_RS18040at 3638.455 kb on + strand, within ECOLIN_RS18040at 3638.455 kb on + strand, within ECOLIN_RS18040at 3638.455 kb on + strand, within ECOLIN_RS18040at 3638.456 kb on - strand, within ECOLIN_RS18040at 3638.495 kb on + strand, within ECOLIN_RS18040at 3638.495 kb on + strand, within ECOLIN_RS18040at 3638.495 kb on + strand, within ECOLIN_RS18040at 3638.550 kb on + strand, within ECOLIN_RS18040at 3638.601 kb on - strand, within ECOLIN_RS18040at 3638.720 kb on - strandat 3638.722 kb on + strandat 3638.856 kb on + strand, within ECOLIN_RS18045at 3638.856 kb on + strand, within ECOLIN_RS18045at 3638.856 kb on + strand, within ECOLIN_RS18045at 3638.857 kb on - strand, within ECOLIN_RS18045at 3638.857 kb on - strand, within ECOLIN_RS18045at 3639.238 kb on + strandat 3639.322 kb on + strand, within ECOLIN_RS18050at 3639.323 kb on - strand, within ECOLIN_RS18050at 3639.347 kb on - strand, within ECOLIN_RS18050at 3639.470 kb on + strand, within ECOLIN_RS18050at 3639.537 kb on + strand, within ECOLIN_RS18050at 3639.696 kb on - strand, within ECOLIN_RS18050at 3639.728 kb on + strand, within ECOLIN_RS18050at 3639.795 kb on + strand, within ECOLIN_RS18050at 3639.795 kb on + strand, within ECOLIN_RS18050at 3639.795 kb on + strand, within ECOLIN_RS18050at 3639.795 kb on + strand, within ECOLIN_RS18050at 3639.795 kb on + strand, within ECOLIN_RS18050at 3639.795 kb on + strand, within ECOLIN_RS18050at 3639.796 kb on - strand, within ECOLIN_RS18050at 3639.998 kb on + strand, within ECOLIN_RS18050at 3639.998 kb on + strand, within ECOLIN_RS18050at 3639.998 kb on + strand, within ECOLIN_RS18050at 3639.998 kb on + strand, within ECOLIN_RS18050at 3639.999 kb on - strand, within ECOLIN_RS18050at 3640.003 kb on + strand, within ECOLIN_RS18050at 3640.003 kb on + strand, within ECOLIN_RS18050at 3640.004 kb on - strand, within ECOLIN_RS18050at 3640.004 kb on - strand, within ECOLIN_RS18050at 3640.276 kb on + strandat 3640.276 kb on + strandat 3640.747 kb on + strandat 3640.835 kb on + strand, within ECOLIN_RS18055at 3640.929 kb on + strand, within ECOLIN_RS18055at 3640.929 kb on + strand, within ECOLIN_RS18055at 3641.026 kb on + strand, within ECOLIN_RS18055at 3641.166 kb on - strand, within ECOLIN_RS18055

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Per-strain Table

Position Strand Gene LocusTag Fraction K25
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3,638,171 - ECOLIN_RS18040 0.39 +0.5
3,638,259 + ECOLIN_RS18040 0.49 -0.5
3,638,298 + ECOLIN_RS18040 0.53 -0.1
3,638,455 + ECOLIN_RS18040 0.71 -0.3
3,638,455 + ECOLIN_RS18040 0.71 -0.0
3,638,455 + ECOLIN_RS18040 0.71 +0.3
3,638,455 + ECOLIN_RS18040 0.71 +0.3
3,638,456 - ECOLIN_RS18040 0.71 +0.6
3,638,495 + ECOLIN_RS18040 0.76 -0.5
3,638,495 + ECOLIN_RS18040 0.76 +0.2
3,638,495 + ECOLIN_RS18040 0.76 +0.2
3,638,550 + ECOLIN_RS18040 0.82 -0.7
3,638,601 - ECOLIN_RS18040 0.88 +0.4
3,638,720 - -0.3
3,638,722 + +0.3
3,638,856 + ECOLIN_RS18045 0.30 -0.2
3,638,856 + ECOLIN_RS18045 0.30 +0.0
3,638,856 + ECOLIN_RS18045 0.30 +0.5
3,638,857 - ECOLIN_RS18045 0.30 -0.2
3,638,857 - ECOLIN_RS18045 0.30 +0.3
3,639,238 + +0.3
3,639,322 + ECOLIN_RS18050 0.15 +0.7
3,639,323 - ECOLIN_RS18050 0.15 +0.5
3,639,347 - ECOLIN_RS18050 0.17 +0.2
3,639,470 + ECOLIN_RS18050 0.28 -1.3
3,639,537 + ECOLIN_RS18050 0.34 -1.0
3,639,696 - ECOLIN_RS18050 0.48 +0.1
3,639,728 + ECOLIN_RS18050 0.50 +0.5
3,639,795 + ECOLIN_RS18050 0.56 -0.4
3,639,795 + ECOLIN_RS18050 0.56 -0.6
3,639,795 + ECOLIN_RS18050 0.56 -0.2
3,639,795 + ECOLIN_RS18050 0.56 +0.8
3,639,795 + ECOLIN_RS18050 0.56 -0.8
3,639,795 + ECOLIN_RS18050 0.56 +0.4
3,639,796 - ECOLIN_RS18050 0.56 -0.4
3,639,998 + ECOLIN_RS18050 0.74 -0.1
3,639,998 + ECOLIN_RS18050 0.74 +0.0
3,639,998 + ECOLIN_RS18050 0.74 -0.5
3,639,998 + ECOLIN_RS18050 0.74 -0.4
3,639,999 - ECOLIN_RS18050 0.74 -0.2
3,640,003 + ECOLIN_RS18050 0.75 +0.0
3,640,003 + ECOLIN_RS18050 0.75 -0.9
3,640,004 - ECOLIN_RS18050 0.75 +0.4
3,640,004 - ECOLIN_RS18050 0.75 -0.2
3,640,276 + -0.0
3,640,276 + -0.2
3,640,747 + +0.8
3,640,835 + ECOLIN_RS18055 0.17 +0.5
3,640,929 + ECOLIN_RS18055 0.25 -0.4
3,640,929 + ECOLIN_RS18055 0.25 +0.8
3,641,026 + ECOLIN_RS18055 0.34 -0.1
3,641,166 - ECOLIN_RS18055 0.46 +0.1

Or see this region's nucleotide sequence