Experiment: K25
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS15980 and ECOLIN_RS15985 are separated by 10 nucleotides ECOLIN_RS15985 and ECOLIN_RS15990 overlap by 4 nucleotides ECOLIN_RS15990 and ECOLIN_RS15995 are separated by 39 nucleotides
ECOLIN_RS15980: ECOLIN_RS15980 - xanthine dehydrogenase molybdenum-binding subunit XdhA, at 3,233,039 to 3,235,336
_RS15980
ECOLIN_RS15985: ECOLIN_RS15985 - xanthine dehydrogenase FAD-binding subunit XdhB, at 3,235,347 to 3,236,225
_RS15985
ECOLIN_RS15990: ECOLIN_RS15990 - xanthine dehydrogenase iron sulfur-binding subunit XdhC, at 3,236,222 to 3,236,701
_RS15990
ECOLIN_RS15995: ECOLIN_RS15995 - sigma-54-dependent Fis family transcriptional regulator, at 3,236,741 to 3,238,519
_RS15995
Position (kb) 3236
3237 Strain fitness (log2 ratio) -1
0
1 at 3235.276 kb on + strand at 3235.303 kb on - strand at 3235.365 kb on + strand at 3235.899 kb on - strand, within ECOLIN_RS15985 at 3235.899 kb on - strand, within ECOLIN_RS15985 at 3236.336 kb on - strand, within ECOLIN_RS15990 at 3236.415 kb on + strand, within ECOLIN_RS15990 at 3236.671 kb on + strand at 3236.672 kb on - strand at 3236.743 kb on - strand at 3236.743 kb on - strand at 3236.761 kb on - strand at 3236.931 kb on - strand, within ECOLIN_RS15995 at 3237.111 kb on + strand, within ECOLIN_RS15995 at 3237.112 kb on - strand, within ECOLIN_RS15995 at 3237.169 kb on + strand, within ECOLIN_RS15995 at 3237.472 kb on + strand, within ECOLIN_RS15995
Per-strain Table
Position Strand Gene LocusTag Fraction K25 remove 3,235,276 + +0.6 3,235,303 - +0.5 3,235,365 + +0.1 3,235,899 - ECOLIN_RS15985 0.63 +0.9 3,235,899 - ECOLIN_RS15985 0.63 -1.3 3,236,336 - ECOLIN_RS15990 0.24 +0.1 3,236,415 + ECOLIN_RS15990 0.40 -0.0 3,236,671 + +0.1 3,236,672 - +0.4 3,236,743 - +0.2 3,236,743 - -0.4 3,236,761 - -0.2 3,236,931 - ECOLIN_RS15995 0.11 -0.3 3,237,111 + ECOLIN_RS15995 0.21 +0.4 3,237,112 - ECOLIN_RS15995 0.21 -0.2 3,237,169 + ECOLIN_RS15995 0.24 -0.2 3,237,472 + ECOLIN_RS15995 0.41 -0.1
Or see this region's nucleotide sequence