Experiment: Bas48
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS25885 and ECOLIN_RS25890 are separated by 226 nucleotides ECOLIN_RS25890 and ECOLIN_RS33500 overlap by 11 nucleotides ECOLIN_RS33500 and ECOLIN_RS25900 are separated by 451 nucleotides ECOLIN_RS25900 and ECOLIN_RS25905 are separated by 44 nucleotides
ECOLIN_RS25885: ECOLIN_RS25885 - Kiwa anti-phage protein KwaB-like domain-containing protein, at 5,196,356 to 5,197,498
_RS25885
ECOLIN_RS25890: ECOLIN_RS25890 - MobC family plasmid mobilization relaxosome protein, at 5,197,725 to 5,198,051
_RS25890
ECOLIN_RS33500: ECOLIN_RS33500 - relaxase/mobilization nuclease domain-containing protein, at 5,198,041 to 5,198,832
_RS33500
ECOLIN_RS25900: ECOLIN_RS25900 - MbeD family mobilization/exclusion protein, at 5,199,284 to 5,199,508
_RS25900
ECOLIN_RS25905: ECOLIN_RS25905 - type II toxin-antitoxin system RelE/ParE family toxin, at 5,199,553 to 5,199,837
_RS25905
ECOLIN_RS25910: ECOLIN_RS25910 - type II toxin-antitoxin system RelB/DinJ family antitoxin, at 5,199,827 to 5,200,069
_RS25910
Position (kb) 5198
5199 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5197.052 kb on - strand, within ECOLIN_RS25885 at 5197.052 kb on - strand, within ECOLIN_RS25885 at 5197.126 kb on - strand, within ECOLIN_RS25885 at 5197.188 kb on + strand, within ECOLIN_RS25885 at 5197.189 kb on - strand, within ECOLIN_RS25885 at 5197.189 kb on - strand, within ECOLIN_RS25885 at 5197.200 kb on - strand, within ECOLIN_RS25885 at 5197.252 kb on + strand, within ECOLIN_RS25885 at 5197.252 kb on + strand, within ECOLIN_RS25885 at 5197.278 kb on - strand, within ECOLIN_RS25885 at 5197.300 kb on + strand, within ECOLIN_RS25885 at 5197.316 kb on - strand, within ECOLIN_RS25885 at 5197.316 kb on - strand, within ECOLIN_RS25885 at 5197.348 kb on + strand, within ECOLIN_RS25885 at 5197.348 kb on + strand, within ECOLIN_RS25885 at 5197.348 kb on + strand, within ECOLIN_RS25885 at 5197.349 kb on - strand, within ECOLIN_RS25885 at 5197.349 kb on - strand, within ECOLIN_RS25885 at 5197.349 kb on - strand, within ECOLIN_RS25885 at 5197.349 kb on - strand, within ECOLIN_RS25885 at 5197.349 kb on - strand, within ECOLIN_RS25885 at 5197.349 kb on - strand, within ECOLIN_RS25885 at 5197.349 kb on - strand, within ECOLIN_RS25885 at 5197.349 kb on - strand, within ECOLIN_RS25885 at 5197.349 kb on - strand, within ECOLIN_RS25885 at 5197.407 kb on - strand at 5197.407 kb on - strand at 5197.411 kb on - strand at 5197.454 kb on - strand at 5197.456 kb on + strand at 5197.457 kb on - strand at 5197.457 kb on - strand at 5197.457 kb on - strand at 5197.457 kb on - strand at 5197.457 kb on - strand at 5197.459 kb on + strand at 5197.459 kb on + strand at 5197.460 kb on - strand at 5197.466 kb on - strand at 5197.802 kb on + strand, within ECOLIN_RS25890 at 5197.874 kb on + strand, within ECOLIN_RS25890 at 5197.894 kb on + strand, within ECOLIN_RS25890 at 5197.894 kb on + strand, within ECOLIN_RS25890 at 5197.894 kb on + strand, within ECOLIN_RS25890 at 5197.894 kb on + strand, within ECOLIN_RS25890 at 5197.933 kb on + strand, within ECOLIN_RS25890 at 5198.000 kb on + strand, within ECOLIN_RS25890 at 5198.000 kb on + strand, within ECOLIN_RS25890 at 5198.001 kb on - strand, within ECOLIN_RS25890 at 5198.096 kb on - strand at 5198.197 kb on + strand, within ECOLIN_RS33500 at 5198.197 kb on + strand, within ECOLIN_RS33500 at 5198.197 kb on + strand, within ECOLIN_RS33500 at 5198.197 kb on + strand, within ECOLIN_RS33500 at 5198.197 kb on + strand, within ECOLIN_RS33500 at 5198.197 kb on + strand, within ECOLIN_RS33500 at 5198.198 kb on - strand, within ECOLIN_RS33500 at 5198.198 kb on - strand, within ECOLIN_RS33500 at 5198.199 kb on + strand, within ECOLIN_RS33500 at 5198.199 kb on + strand, within ECOLIN_RS33500 at 5198.199 kb on + strand, within ECOLIN_RS33500 at 5198.199 kb on + strand, within ECOLIN_RS33500 at 5198.199 kb on + strand, within ECOLIN_RS33500 at 5198.199 kb on + strand, within ECOLIN_RS33500 at 5198.200 kb on - strand, within ECOLIN_RS33500 at 5198.200 kb on - strand, within ECOLIN_RS33500 at 5198.295 kb on - strand, within ECOLIN_RS33500 at 5198.295 kb on - strand, within ECOLIN_RS33500 at 5198.298 kb on + strand, within ECOLIN_RS33500 at 5198.309 kb on - strand, within ECOLIN_RS33500 at 5198.309 kb on - strand, within ECOLIN_RS33500 at 5198.309 kb on - strand, within ECOLIN_RS33500 at 5198.407 kb on + strand, within ECOLIN_RS33500 at 5198.407 kb on + strand, within ECOLIN_RS33500 at 5198.407 kb on + strand, within ECOLIN_RS33500 at 5198.407 kb on + strand, within ECOLIN_RS33500 at 5198.408 kb on - strand, within ECOLIN_RS33500 at 5198.408 kb on - strand, within ECOLIN_RS33500 at 5198.408 kb on - strand, within ECOLIN_RS33500 at 5198.611 kb on - strand, within ECOLIN_RS33500 at 5198.632 kb on - strand, within ECOLIN_RS33500 at 5198.714 kb on + strand, within ECOLIN_RS33500 at 5198.714 kb on + strand, within ECOLIN_RS33500 at 5198.715 kb on - strand, within ECOLIN_RS33500 at 5198.715 kb on - strand, within ECOLIN_RS33500 at 5198.728 kb on + strand, within ECOLIN_RS33500 at 5198.728 kb on + strand, within ECOLIN_RS33500 at 5198.728 kb on + strand, within ECOLIN_RS33500 at 5198.728 kb on + strand, within ECOLIN_RS33500 at 5198.728 kb on + strand, within ECOLIN_RS33500 at 5198.729 kb on - strand, within ECOLIN_RS33500 at 5198.729 kb on - strand, within ECOLIN_RS33500 at 5198.748 kb on + strand, within ECOLIN_RS33500 at 5198.837 kb on - strand at 5198.837 kb on - strand at 5198.837 kb on - strand at 5198.837 kb on - strand at 5198.871 kb on + strand at 5198.871 kb on + strand at 5198.871 kb on + strand at 5198.872 kb on - strand at 5198.872 kb on - strand at 5198.872 kb on - strand at 5198.907 kb on + strand at 5198.907 kb on + strand at 5198.908 kb on - strand at 5198.908 kb on - strand at 5198.916 kb on + strand at 5198.917 kb on - strand at 5198.945 kb on + strand at 5198.946 kb on - strand at 5198.946 kb on - strand at 5198.946 kb on - strand at 5198.958 kb on + strand at 5198.958 kb on + strand at 5198.958 kb on + strand at 5198.958 kb on + strand at 5198.958 kb on + strand at 5198.959 kb on - strand at 5198.959 kb on - strand at 5198.959 kb on - strand at 5198.959 kb on - strand at 5198.959 kb on - strand at 5198.992 kb on - strand at 5198.999 kb on + strand at 5198.999 kb on + strand at 5198.999 kb on + strand at 5199.000 kb on - strand at 5199.000 kb on - strand at 5199.066 kb on + strand at 5199.066 kb on + strand at 5199.067 kb on - strand at 5199.067 kb on - strand at 5199.067 kb on - strand at 5199.067 kb on - strand at 5199.125 kb on + strand at 5199.125 kb on + strand at 5199.125 kb on + strand at 5199.125 kb on + strand at 5199.125 kb on + strand at 5199.125 kb on + strand at 5199.126 kb on - strand at 5199.126 kb on - strand at 5199.126 kb on - strand at 5199.126 kb on - strand at 5199.126 kb on - strand at 5199.126 kb on - strand at 5199.126 kb on - strand at 5199.128 kb on + strand at 5199.128 kb on + strand at 5199.129 kb on - strand at 5199.129 kb on - strand at 5199.168 kb on - strand at 5199.201 kb on - strand at 5199.201 kb on - strand at 5199.213 kb on - strand at 5199.252 kb on + strand at 5199.253 kb on - strand at 5199.253 kb on - strand at 5199.253 kb on - strand at 5199.253 kb on - strand at 5199.256 kb on + strand at 5199.256 kb on + strand at 5199.257 kb on - strand at 5199.309 kb on + strand, within ECOLIN_RS25900 at 5199.309 kb on + strand, within ECOLIN_RS25900 at 5199.318 kb on + strand, within ECOLIN_RS25900 at 5199.318 kb on + strand, within ECOLIN_RS25900 at 5199.318 kb on + strand, within ECOLIN_RS25900 at 5199.319 kb on - strand, within ECOLIN_RS25900 at 5199.319 kb on - strand, within ECOLIN_RS25900 at 5199.329 kb on + strand, within ECOLIN_RS25900 at 5199.330 kb on - strand, within ECOLIN_RS25900 at 5199.362 kb on + strand, within ECOLIN_RS25900 at 5199.362 kb on + strand, within ECOLIN_RS25900 at 5199.362 kb on + strand, within ECOLIN_RS25900 at 5199.372 kb on + strand, within ECOLIN_RS25900 at 5199.373 kb on - strand, within ECOLIN_RS25900 at 5199.373 kb on - strand, within ECOLIN_RS25900 at 5199.391 kb on + strand, within ECOLIN_RS25900 at 5199.392 kb on - strand, within ECOLIN_RS25900 at 5199.477 kb on + strand, within ECOLIN_RS25900 at 5199.478 kb on - strand, within ECOLIN_RS25900 at 5199.478 kb on - strand, within ECOLIN_RS25900 at 5199.478 kb on - strand, within ECOLIN_RS25900 at 5199.530 kb on - strand at 5199.554 kb on + strand at 5199.554 kb on + strand at 5199.554 kb on + strand at 5199.554 kb on + strand at 5199.554 kb on + strand at 5199.554 kb on + strand at 5199.555 kb on - strand at 5199.555 kb on - strand at 5199.555 kb on - strand at 5199.555 kb on - strand at 5199.556 kb on + strand at 5199.556 kb on + strand at 5199.557 kb on - strand at 5199.557 kb on - strand at 5199.557 kb on - strand at 5199.557 kb on - strand at 5199.579 kb on - strand at 5199.625 kb on - strand, within ECOLIN_RS25905 at 5199.647 kb on + strand, within ECOLIN_RS25905 at 5199.648 kb on - strand, within ECOLIN_RS25905 at 5199.687 kb on - strand, within ECOLIN_RS25905 at 5199.736 kb on + strand, within ECOLIN_RS25905 at 5199.736 kb on + strand, within ECOLIN_RS25905 at 5199.737 kb on - strand, within ECOLIN_RS25905 at 5199.737 kb on - strand, within ECOLIN_RS25905 at 5199.737 kb on - strand, within ECOLIN_RS25905 at 5199.737 kb on - strand, within ECOLIN_RS25905 at 5199.737 kb on - strand, within ECOLIN_RS25905 at 5199.829 kb on - strand at 5199.830 kb on + strand at 5199.830 kb on + strand at 5199.830 kb on + strand at 5199.830 kb on + strand at 5199.830 kb on + strand at 5199.830 kb on + strand at 5199.830 kb on + strand at 5199.830 kb on + strand at 5199.830 kb on + strand at 5199.830 kb on + strand at 5199.830 kb on + strand at 5199.830 kb on + strand at 5199.830 kb on + strand at 5199.831 kb on - strand at 5199.831 kb on - strand at 5199.831 kb on - strand at 5199.831 kb on - strand at 5199.831 kb on - strand at 5199.831 kb on - strand at 5199.831 kb on - strand at 5199.831 kb on - strand at 5199.831 kb on - strand at 5199.831 kb on - strand at 5199.831 kb on - strand at 5199.831 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas48 remove 5,197,052 - ECOLIN_RS25885 0.61 +0.2 5,197,052 - ECOLIN_RS25885 0.61 +1.6 5,197,126 - ECOLIN_RS25885 0.67 +1.0 5,197,188 + ECOLIN_RS25885 0.73 +0.8 5,197,189 - ECOLIN_RS25885 0.73 +1.0 5,197,189 - ECOLIN_RS25885 0.73 +0.9 5,197,200 - ECOLIN_RS25885 0.74 +0.9 5,197,252 + ECOLIN_RS25885 0.78 +1.7 5,197,252 + ECOLIN_RS25885 0.78 +0.9 5,197,278 - ECOLIN_RS25885 0.81 +0.7 5,197,300 + ECOLIN_RS25885 0.83 +1.2 5,197,316 - ECOLIN_RS25885 0.84 +1.0 5,197,316 - ECOLIN_RS25885 0.84 +0.8 5,197,348 + ECOLIN_RS25885 0.87 +0.7 5,197,348 + ECOLIN_RS25885 0.87 +1.8 5,197,348 + ECOLIN_RS25885 0.87 +0.9 5,197,349 - ECOLIN_RS25885 0.87 +1.0 5,197,349 - ECOLIN_RS25885 0.87 +0.9 5,197,349 - ECOLIN_RS25885 0.87 +0.9 5,197,349 - ECOLIN_RS25885 0.87 +0.8 5,197,349 - ECOLIN_RS25885 0.87 +0.8 5,197,349 - ECOLIN_RS25885 0.87 +0.8 5,197,349 - ECOLIN_RS25885 0.87 +0.9 5,197,349 - ECOLIN_RS25885 0.87 +1.2 5,197,349 - ECOLIN_RS25885 0.87 +1.0 5,197,407 - +0.8 5,197,407 - +1.0 5,197,411 - +0.9 5,197,454 - +0.8 5,197,456 + +1.0 5,197,457 - +0.8 5,197,457 - +0.9 5,197,457 - +0.8 5,197,457 - +0.9 5,197,457 - +1.2 5,197,459 + +0.8 5,197,459 + +0.4 5,197,460 - +0.8 5,197,466 - +0.9 5,197,802 + ECOLIN_RS25890 0.24 +1.1 5,197,874 + ECOLIN_RS25890 0.46 +1.5 5,197,894 + ECOLIN_RS25890 0.52 +1.4 5,197,894 + ECOLIN_RS25890 0.52 +1.3 5,197,894 + ECOLIN_RS25890 0.52 +1.2 5,197,894 + ECOLIN_RS25890 0.52 +1.3 5,197,933 + ECOLIN_RS25890 0.64 +1.3 5,198,000 + ECOLIN_RS25890 0.84 +1.0 5,198,000 + ECOLIN_RS25890 0.84 +1.1 5,198,001 - ECOLIN_RS25890 0.84 +1.3 5,198,096 - +0.8 5,198,197 + ECOLIN_RS33500 0.20 +1.1 5,198,197 + ECOLIN_RS33500 0.20 +1.1 5,198,197 + ECOLIN_RS33500 0.20 +1.5 5,198,197 + ECOLIN_RS33500 0.20 +0.8 5,198,197 + ECOLIN_RS33500 0.20 +0.9 5,198,197 + ECOLIN_RS33500 0.20 +1.3 5,198,198 - ECOLIN_RS33500 0.20 +1.0 5,198,198 - ECOLIN_RS33500 0.20 +1.1 5,198,199 + ECOLIN_RS33500 0.20 +1.3 5,198,199 + ECOLIN_RS33500 0.20 +1.2 5,198,199 + ECOLIN_RS33500 0.20 +1.0 5,198,199 + ECOLIN_RS33500 0.20 +1.4 5,198,199 + ECOLIN_RS33500 0.20 +1.2 5,198,199 + ECOLIN_RS33500 0.20 +1.5 5,198,200 - ECOLIN_RS33500 0.20 +1.6 5,198,200 - ECOLIN_RS33500 0.20 +1.4 5,198,295 - ECOLIN_RS33500 0.32 +1.3 5,198,295 - ECOLIN_RS33500 0.32 +2.1 5,198,298 + ECOLIN_RS33500 0.32 +1.0 5,198,309 - ECOLIN_RS33500 0.34 +1.3 5,198,309 - ECOLIN_RS33500 0.34 +1.6 5,198,309 - ECOLIN_RS33500 0.34 +1.5 5,198,407 + ECOLIN_RS33500 0.46 +1.2 5,198,407 + ECOLIN_RS33500 0.46 +0.9 5,198,407 + ECOLIN_RS33500 0.46 +1.3 5,198,407 + ECOLIN_RS33500 0.46 +0.8 5,198,408 - ECOLIN_RS33500 0.46 +1.9 5,198,408 - ECOLIN_RS33500 0.46 +0.4 5,198,408 - ECOLIN_RS33500 0.46 +1.4 5,198,611 - ECOLIN_RS33500 0.72 +0.9 5,198,632 - ECOLIN_RS33500 0.75 +1.1 5,198,714 + ECOLIN_RS33500 0.85 +0.4 5,198,714 + ECOLIN_RS33500 0.85 +0.9 5,198,715 - ECOLIN_RS33500 0.85 +1.3 5,198,715 - ECOLIN_RS33500 0.85 +1.4 5,198,728 + ECOLIN_RS33500 0.87 +0.8 5,198,728 + ECOLIN_RS33500 0.87 +0.6 5,198,728 + ECOLIN_RS33500 0.87 +1.1 5,198,728 + ECOLIN_RS33500 0.87 +2.2 5,198,728 + ECOLIN_RS33500 0.87 +0.5 5,198,729 - ECOLIN_RS33500 0.87 +1.3 5,198,729 - ECOLIN_RS33500 0.87 +1.7 5,198,748 + ECOLIN_RS33500 0.89 +1.9 5,198,837 - +1.1 5,198,837 - +1.7 5,198,837 - +1.9 5,198,837 - +2.0 5,198,871 + +1.2 5,198,871 + +1.1 5,198,871 + -3.1 5,198,872 - +0.8 5,198,872 - +1.2 5,198,872 - +0.5 5,198,907 + +0.9 5,198,907 + +0.9 5,198,908 - +0.8 5,198,908 - +0.7 5,198,916 + +1.1 5,198,917 - +0.4 5,198,945 + +0.9 5,198,946 - +1.1 5,198,946 - +1.1 5,198,946 - +1.2 5,198,958 + +0.9 5,198,958 + +1.0 5,198,958 + +1.0 5,198,958 + +1.1 5,198,958 + +0.7 5,198,959 - +0.9 5,198,959 - +1.1 5,198,959 - +0.8 5,198,959 - +1.2 5,198,959 - +1.0 5,198,992 - +1.2 5,198,999 + +0.5 5,198,999 + +0.9 5,198,999 + +0.9 5,199,000 - +1.1 5,199,000 - +0.9 5,199,066 + +0.7 5,199,066 + +1.0 5,199,067 - +0.1 5,199,067 - +0.9 5,199,067 - +1.0 5,199,067 - -0.9 5,199,125 + +1.0 5,199,125 + +1.0 5,199,125 + +1.0 5,199,125 + +1.2 5,199,125 + +1.1 5,199,125 + +1.0 5,199,126 - +1.3 5,199,126 - +0.5 5,199,126 - +1.8 5,199,126 - +0.6 5,199,126 - +0.4 5,199,126 - +1.1 5,199,126 - +0.9 5,199,128 + +0.9 5,199,128 + +0.7 5,199,129 - +0.7 5,199,129 - +1.2 5,199,168 - +1.2 5,199,201 - +0.9 5,199,201 - +2.2 5,199,213 - +1.0 5,199,252 + +0.9 5,199,253 - +0.7 5,199,253 - +1.0 5,199,253 - +1.0 5,199,253 - +0.7 5,199,256 + +0.3 5,199,256 + +0.6 5,199,257 - +1.4 5,199,309 + ECOLIN_RS25900 0.11 +2.2 5,199,309 + ECOLIN_RS25900 0.11 +0.7 5,199,318 + ECOLIN_RS25900 0.15 +0.8 5,199,318 + ECOLIN_RS25900 0.15 +0.8 5,199,318 + ECOLIN_RS25900 0.15 +0.8 5,199,319 - ECOLIN_RS25900 0.16 +1.5 5,199,319 - ECOLIN_RS25900 0.16 +1.3 5,199,329 + ECOLIN_RS25900 0.20 +0.6 5,199,330 - ECOLIN_RS25900 0.20 +0.9 5,199,362 + ECOLIN_RS25900 0.35 +0.8 5,199,362 + ECOLIN_RS25900 0.35 +0.8 5,199,362 + ECOLIN_RS25900 0.35 +0.7 5,199,372 + ECOLIN_RS25900 0.39 +0.7 5,199,373 - ECOLIN_RS25900 0.40 +1.2 5,199,373 - ECOLIN_RS25900 0.40 +1.1 5,199,391 + ECOLIN_RS25900 0.48 +0.9 5,199,392 - ECOLIN_RS25900 0.48 +1.0 5,199,477 + ECOLIN_RS25900 0.86 +1.0 5,199,478 - ECOLIN_RS25900 0.86 +1.1 5,199,478 - ECOLIN_RS25900 0.86 +1.1 5,199,478 - ECOLIN_RS25900 0.86 +1.0 5,199,530 - +0.7 5,199,554 + +1.0 5,199,554 + +1.0 5,199,554 + +0.6 5,199,554 + +0.7 5,199,554 + +0.7 5,199,554 + +1.0 5,199,555 - +1.0 5,199,555 - +1.0 5,199,555 - +0.9 5,199,555 - +0.9 5,199,556 + +1.1 5,199,556 + +0.7 5,199,557 - +0.7 5,199,557 - +0.9 5,199,557 - +0.6 5,199,557 - +0.1 5,199,579 - +1.7 5,199,625 - ECOLIN_RS25905 0.25 +1.1 5,199,647 + ECOLIN_RS25905 0.33 +0.7 5,199,648 - ECOLIN_RS25905 0.33 +1.1 5,199,687 - ECOLIN_RS25905 0.47 +1.0 5,199,736 + ECOLIN_RS25905 0.64 +1.0 5,199,736 + ECOLIN_RS25905 0.64 +0.9 5,199,737 - ECOLIN_RS25905 0.65 +0.9 5,199,737 - ECOLIN_RS25905 0.65 +2.0 5,199,737 - ECOLIN_RS25905 0.65 +1.1 5,199,737 - ECOLIN_RS25905 0.65 +0.8 5,199,737 - ECOLIN_RS25905 0.65 +1.6 5,199,829 - +1.1 5,199,830 + +0.8 5,199,830 + +0.9 5,199,830 + +0.9 5,199,830 + +1.0 5,199,830 + +0.3 5,199,830 + -0.2 5,199,830 + +1.3 5,199,830 + +0.8 5,199,830 + +0.7 5,199,830 + -0.2 5,199,830 + +0.9 5,199,830 + +1.1 5,199,830 + +0.8 5,199,831 - +1.3 5,199,831 - +1.3 5,199,831 - +1.1 5,199,831 - +1.2 5,199,831 - +1.0 5,199,831 - +1.1 5,199,831 - +1.1 5,199,831 - +1.2 5,199,831 - +1.1 5,199,831 - +1.2 5,199,831 - +1.2 5,199,831 - +1.2
Or see this region's nucleotide sequence