Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS25900

Experiment: Bas48

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas48
5,198,295	-		ECOLIN_RS33500	0.32	+1.3
5,198,295	-		ECOLIN_RS33500	0.32	+2.1
5,198,298	+		ECOLIN_RS33500	0.32	+1.0
5,198,309	-		ECOLIN_RS33500	0.34	+1.3
5,198,309	-		ECOLIN_RS33500	0.34	+1.6
5,198,309	-		ECOLIN_RS33500	0.34	+1.5
5,198,407	+		ECOLIN_RS33500	0.46	+1.2
5,198,407	+		ECOLIN_RS33500	0.46	+0.9
5,198,407	+		ECOLIN_RS33500	0.46	+1.3
5,198,407	+		ECOLIN_RS33500	0.46	+0.8
5,198,408	-		ECOLIN_RS33500	0.46	+1.9
5,198,408	-		ECOLIN_RS33500	0.46	+0.4
5,198,408	-		ECOLIN_RS33500	0.46	+1.4
5,198,611	-		ECOLIN_RS33500	0.72	+0.9
5,198,632	-		ECOLIN_RS33500	0.75	+1.1
5,198,714	+		ECOLIN_RS33500	0.85	+0.4
5,198,714	+		ECOLIN_RS33500	0.85	+0.9
5,198,715	-		ECOLIN_RS33500	0.85	+1.3
5,198,715	-		ECOLIN_RS33500	0.85	+1.4
5,198,728	+		ECOLIN_RS33500	0.87	+0.8
5,198,728	+		ECOLIN_RS33500	0.87	+0.6
5,198,728	+		ECOLIN_RS33500	0.87	+1.1
5,198,728	+		ECOLIN_RS33500	0.87	+2.2
5,198,728	+		ECOLIN_RS33500	0.87	+0.5
5,198,729	-		ECOLIN_RS33500	0.87	+1.3
5,198,729	-		ECOLIN_RS33500	0.87	+1.7
5,198,748	+		ECOLIN_RS33500	0.89	+1.9
5,198,837	-				+1.1
5,198,837	-				+1.7
5,198,837	-				+1.9
5,198,837	-				+2.0
5,198,871	+				+1.2
5,198,871	+				+1.1
5,198,871	+				-3.1
5,198,872	-				+0.8
5,198,872	-				+1.2
5,198,872	-				+0.5
5,198,907	+				+0.9
5,198,907	+				+0.9
5,198,908	-				+0.8
5,198,908	-				+0.7
5,198,916	+				+1.1
5,198,917	-				+0.4
5,198,945	+				+0.9
5,198,946	-				+1.1
5,198,946	-				+1.1
5,198,946	-				+1.2
5,198,958	+				+0.9
5,198,958	+				+1.0
5,198,958	+				+1.0
5,198,958	+				+1.1
5,198,958	+				+0.7
5,198,959	-				+0.9
5,198,959	-				+1.1
5,198,959	-				+0.8
5,198,959	-				+1.2
5,198,959	-				+1.0
5,198,992	-				+1.2
5,198,999	+				+0.5
5,198,999	+				+0.9
5,198,999	+				+0.9
5,199,000	-				+1.1
5,199,000	-				+0.9
5,199,066	+				+0.7
5,199,066	+				+1.0
5,199,067	-				+0.1
5,199,067	-				+0.9
5,199,067	-				+1.0
5,199,067	-				-0.9
5,199,125	+				+1.0
5,199,125	+				+1.0
5,199,125	+				+1.0
5,199,125	+				+1.2
5,199,125	+				+1.1
5,199,125	+				+1.0
5,199,126	-				+1.3
5,199,126	-				+0.5
5,199,126	-				+1.8
5,199,126	-				+0.6
5,199,126	-				+0.4
5,199,126	-				+1.1
5,199,126	-				+0.9
5,199,128	+				+0.9
5,199,128	+				+0.7
5,199,129	-				+0.7
5,199,129	-				+1.2
5,199,168	-				+1.2
5,199,201	-				+0.9
5,199,201	-				+2.2
5,199,213	-				+1.0
5,199,252	+				+0.9
5,199,253	-				+0.7
5,199,253	-				+1.0
5,199,253	-				+1.0
5,199,253	-				+0.7
5,199,256	+				+0.3
5,199,256	+				+0.6
5,199,257	-				+1.4
5,199,309	+		ECOLIN_RS25900	0.11	+2.2
5,199,309	+		ECOLIN_RS25900	0.11	+0.7
5,199,318	+		ECOLIN_RS25900	0.15	+0.8
5,199,318	+		ECOLIN_RS25900	0.15	+0.8
5,199,318	+		ECOLIN_RS25900	0.15	+0.8
5,199,319	-		ECOLIN_RS25900	0.16	+1.5
5,199,319	-		ECOLIN_RS25900	0.16	+1.3
5,199,329	+		ECOLIN_RS25900	0.20	+0.6
5,199,330	-		ECOLIN_RS25900	0.20	+0.9
5,199,362	+		ECOLIN_RS25900	0.35	+0.8
5,199,362	+		ECOLIN_RS25900	0.35	+0.8
5,199,362	+		ECOLIN_RS25900	0.35	+0.7
5,199,372	+		ECOLIN_RS25900	0.39	+0.7
5,199,373	-		ECOLIN_RS25900	0.40	+1.2
5,199,373	-		ECOLIN_RS25900	0.40	+1.1
5,199,391	+		ECOLIN_RS25900	0.48	+0.9
5,199,392	-		ECOLIN_RS25900	0.48	+1.0
5,199,477	+		ECOLIN_RS25900	0.86	+1.0
5,199,478	-		ECOLIN_RS25900	0.86	+1.1
5,199,478	-		ECOLIN_RS25900	0.86	+1.1
5,199,478	-		ECOLIN_RS25900	0.86	+1.0
5,199,530	-				+0.7
5,199,554	+				+1.0
5,199,554	+				+1.0
5,199,554	+				+0.6
5,199,554	+				+0.7
5,199,554	+				+0.7
5,199,554	+				+1.0
5,199,555	-				+1.0
5,199,555	-				+1.0
5,199,555	-				+0.9
5,199,555	-				+0.9
5,199,556	+				+1.1
5,199,556	+				+0.7
5,199,557	-				+0.7
5,199,557	-				+0.9
5,199,557	-				+0.6
5,199,557	-				+0.1
5,199,579	-				+1.7
5,199,625	-		ECOLIN_RS25905	0.25	+1.1
5,199,647	+		ECOLIN_RS25905	0.33	+0.7
5,199,648	-		ECOLIN_RS25905	0.33	+1.1
5,199,687	-		ECOLIN_RS25905	0.47	+1.0
5,199,736	+		ECOLIN_RS25905	0.64	+1.0
5,199,736	+		ECOLIN_RS25905	0.64	+0.9
5,199,737	-		ECOLIN_RS25905	0.65	+0.9
5,199,737	-		ECOLIN_RS25905	0.65	+2.0
5,199,737	-		ECOLIN_RS25905	0.65	+1.1
5,199,737	-		ECOLIN_RS25905	0.65	+0.8
5,199,737	-		ECOLIN_RS25905	0.65	+1.6
5,199,829	-				+1.1
5,199,830	+				+0.8
5,199,830	+				+0.9
5,199,830	+				+0.9
5,199,830	+				+1.0
5,199,830	+				+0.3
5,199,830	+				-0.2
5,199,830	+				+1.3
5,199,830	+				+0.8
5,199,830	+				+0.7
5,199,830	+				-0.2
5,199,830	+				+0.9
5,199,830	+				+1.1
5,199,830	+				+0.8
5,199,831	-				+1.3
5,199,831	-				+1.3
5,199,831	-				+1.1
5,199,831	-				+1.2
5,199,831	-				+1.0
5,199,831	-				+1.1
5,199,831	-				+1.1
5,199,831	-				+1.2
5,199,831	-				+1.1
5,199,831	-				+1.2
5,199,831	-				+1.2
5,199,831	-				+1.2
5,199,851	+				+0.6
5,199,851	+				+0.5
5,199,960	+		ECOLIN_RS25910	0.55	+0.1
5,199,960	+		ECOLIN_RS25910	0.55	-0.5
5,199,960	+		ECOLIN_RS25910	0.55	-0.6
5,199,960	+		ECOLIN_RS25910	0.55	-0.0
5,199,960	+		ECOLIN_RS25910	0.55	-0.1
5,199,960	+		ECOLIN_RS25910	0.55	-0.5
5,199,960	+		ECOLIN_RS25910	0.55	-0.4
5,199,961	-		ECOLIN_RS25910	0.55	-0.0
5,199,961	-		ECOLIN_RS25910	0.55	+0.1
5,199,961	-		ECOLIN_RS25910	0.55	+0.4
5,199,961	-		ECOLIN_RS25910	0.55	-0.0
5,199,961	-		ECOLIN_RS25910	0.55	+0.3
5,200,020	+		ECOLIN_RS25910	0.79	-0.1
5,200,021	-		ECOLIN_RS25910	0.80	+0.3
5,200,055	-				-0.3
5,200,055	-				-0.4
5,200,055	-				+0.1
5,200,057	+				+0.1
5,200,058	-				+0.3
5,200,104	-				+0.9
5,200,112	+				+0.1
5,200,112	+				+0.0
5,200,112	+				-0.1
5,200,112	+				+0.1
5,200,112	+				+0.4
5,200,112	+				+0.0
5,200,113	-				+0.3
5,200,113	-				+0.2
5,200,113	-				+0.2
5,200,113	-				+0.2
5,200,113	-				-0.3
5,200,115	+				-0.3
5,200,115	+				-0.6
5,200,115	+				-0.2
5,200,115	+				-0.7
5,200,115	+				-0.5
5,200,115	+				-1.6
5,200,115	+				-0.5
5,200,115	+				-2.0
5,200,115	+				-0.2
5,200,116	-				+0.9
5,200,116	-				+0.2
5,200,116	-				+1.0
5,200,189	+				+0.7
5,200,189	+				+0.9
5,200,190	-				+1.0
5,200,190	-				+0.8
5,200,190	-				+1.1
5,200,194	+				+0.5
5,200,194	+				-1.9
5,200,195	-				+0.8
5,200,195	-				+1.4
5,200,230	+				-0.5
5,200,230	+				+0.0
5,200,230	+				-0.6
5,200,231	-				+0.0
5,200,274	-				+0.1
5,200,274	-				+0.2
5,200,282	+				-0.4
5,200,282	+				+0.3
5,200,385	+				-0.4
5,200,385	+				-1.2
5,200,386	-				+2.7
5,200,386	-				+0.6
5,200,402	-				+1.4
5,200,451	+		ECOLIN_RS25915	0.13	+0.6
5,200,451	+		ECOLIN_RS25915	0.13	-0.8
5,200,452	-		ECOLIN_RS25915	0.13	-0.4
5,200,452	-		ECOLIN_RS25915	0.13	-0.6
5,200,452	-		ECOLIN_RS25915	0.13	-1.2
5,200,462	+		ECOLIN_RS25915	0.14	-1.0
5,200,463	-		ECOLIN_RS25915	0.14	+0.8
5,200,481	+		ECOLIN_RS25915	0.16	+0.6
5,200,481	+		ECOLIN_RS25915	0.16	+0.2
5,200,481	+		ECOLIN_RS25915	0.16	-0.0