Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS18450

Experiment: Bas48

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS18440 and ECOLIN_RS18445 overlap by 4 nucleotidesECOLIN_RS18445 and ECOLIN_RS18450 are separated by 212 nucleotidesECOLIN_RS18450 and ECOLIN_RS18455 overlap by 4 nucleotidesECOLIN_RS18455 and ECOLIN_RS18460 overlap by 4 nucleotides ECOLIN_RS18440: ECOLIN_RS18440 - RNase adapter RapZ, at 3,710,953 to 3,711,807 _RS18440 ECOLIN_RS18445: ECOLIN_RS18445 - PTS phosphocarrier protein NPr, at 3,711,804 to 3,712,076 _RS18445 ECOLIN_RS18450: ECOLIN_RS18450 - PhoP regulatory network protein YrbL, at 3,712,289 to 3,712,921 _RS18450 ECOLIN_RS18455: ECOLIN_RS18455 - monofunctional biosynthetic peptidoglycan transglycosylase, at 3,712,918 to 3,713,646 _RS18455 ECOLIN_RS18460: ECOLIN_RS18460 - isoprenoid biosynthesis glyoxalase ElbB, at 3,713,643 to 3,714,296 _RS18460 Position (kb) 3712 3713Strain fitness (log2 ratio) -1 0 1 2at 3711.607 kb on - strand, within ECOLIN_RS18440at 3711.626 kb on - strand, within ECOLIN_RS18440at 3711.645 kb on + strand, within ECOLIN_RS18440at 3711.646 kb on - strand, within ECOLIN_RS18440at 3711.666 kb on + strand, within ECOLIN_RS18440at 3711.670 kb on + strand, within ECOLIN_RS18440at 3711.670 kb on + strand, within ECOLIN_RS18440at 3711.719 kb on - strand, within ECOLIN_RS18440at 3711.720 kb on + strand, within ECOLIN_RS18440at 3711.720 kb on + strand, within ECOLIN_RS18440at 3711.910 kb on + strand, within ECOLIN_RS18445at 3712.052 kb on + strandat 3712.075 kb on - strandat 3712.252 kb on + strandat 3712.252 kb on + strandat 3712.272 kb on + strandat 3712.272 kb on + strandat 3712.343 kb on + strandat 3712.385 kb on + strand, within ECOLIN_RS18450at 3712.385 kb on + strand, within ECOLIN_RS18450at 3712.428 kb on + strand, within ECOLIN_RS18450at 3712.434 kb on - strand, within ECOLIN_RS18450at 3713.040 kb on + strand, within ECOLIN_RS18455at 3713.047 kb on + strand, within ECOLIN_RS18455at 3713.047 kb on + strand, within ECOLIN_RS18455at 3713.047 kb on + strand, within ECOLIN_RS18455at 3713.048 kb on - strand, within ECOLIN_RS18455at 3713.080 kb on - strand, within ECOLIN_RS18455at 3713.105 kb on + strand, within ECOLIN_RS18455at 3713.260 kb on + strand, within ECOLIN_RS18455at 3713.720 kb on + strand, within ECOLIN_RS18460at 3713.720 kb on + strand, within ECOLIN_RS18460at 3713.721 kb on - strand, within ECOLIN_RS18460at 3713.721 kb on - strand, within ECOLIN_RS18460at 3713.721 kb on - strand, within ECOLIN_RS18460at 3713.721 kb on - strand, within ECOLIN_RS18460at 3713.721 kb on - strand, within ECOLIN_RS18460at 3713.721 kb on - strand, within ECOLIN_RS18460at 3713.721 kb on - strand, within ECOLIN_RS18460at 3713.722 kb on + strand, within ECOLIN_RS18460at 3713.722 kb on + strand, within ECOLIN_RS18460at 3713.722 kb on + strand, within ECOLIN_RS18460at 3713.890 kb on - strand, within ECOLIN_RS18460at 3713.891 kb on + strand, within ECOLIN_RS18460at 3713.891 kb on + strand, within ECOLIN_RS18460at 3713.892 kb on - strand, within ECOLIN_RS18460at 3713.892 kb on - strand, within ECOLIN_RS18460at 3713.898 kb on - strand, within ECOLIN_RS18460

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas48
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3,711,607 - ECOLIN_RS18440 0.76 -0.1
3,711,626 - ECOLIN_RS18440 0.79 -1.2
3,711,645 + ECOLIN_RS18440 0.81 +1.1
3,711,646 - ECOLIN_RS18440 0.81 -0.5
3,711,666 + ECOLIN_RS18440 0.83 +0.1
3,711,670 + ECOLIN_RS18440 0.84 -1.1
3,711,670 + ECOLIN_RS18440 0.84 +0.4
3,711,719 - ECOLIN_RS18440 0.90 -0.5
3,711,720 + ECOLIN_RS18440 0.90 -0.4
3,711,720 + ECOLIN_RS18440 0.90 -0.0
3,711,910 + ECOLIN_RS18445 0.39 -0.1
3,712,052 + +1.3
3,712,075 - +2.0
3,712,252 + -0.3
3,712,252 + +0.6
3,712,272 + -0.3
3,712,272 + +0.2
3,712,343 + -0.0
3,712,385 + ECOLIN_RS18450 0.15 +1.4
3,712,385 + ECOLIN_RS18450 0.15 +0.1
3,712,428 + ECOLIN_RS18450 0.22 -0.3
3,712,434 - ECOLIN_RS18450 0.23 +1.8
3,713,040 + ECOLIN_RS18455 0.17 +0.6
3,713,047 + ECOLIN_RS18455 0.18 -0.9
3,713,047 + ECOLIN_RS18455 0.18 +0.6
3,713,047 + ECOLIN_RS18455 0.18 +0.0
3,713,048 - ECOLIN_RS18455 0.18 -0.3
3,713,080 - ECOLIN_RS18455 0.22 +0.2
3,713,105 + ECOLIN_RS18455 0.26 +2.2
3,713,260 + ECOLIN_RS18455 0.47 -0.1
3,713,720 + ECOLIN_RS18460 0.12 +0.2
3,713,720 + ECOLIN_RS18460 0.12 -0.3
3,713,721 - ECOLIN_RS18460 0.12 +0.1
3,713,721 - ECOLIN_RS18460 0.12 +0.3
3,713,721 - ECOLIN_RS18460 0.12 -0.7
3,713,721 - ECOLIN_RS18460 0.12 +0.6
3,713,721 - ECOLIN_RS18460 0.12 +0.0
3,713,721 - ECOLIN_RS18460 0.12 -0.1
3,713,721 - ECOLIN_RS18460 0.12 -0.5
3,713,722 + ECOLIN_RS18460 0.12 -0.7
3,713,722 + ECOLIN_RS18460 0.12 +0.5
3,713,722 + ECOLIN_RS18460 0.12 +0.5
3,713,890 - ECOLIN_RS18460 0.38 +0.1
3,713,891 + ECOLIN_RS18460 0.38 +1.3
3,713,891 + ECOLIN_RS18460 0.38 +0.3
3,713,892 - ECOLIN_RS18460 0.38 -0.4
3,713,892 - ECOLIN_RS18460 0.38 +0.9
3,713,898 - ECOLIN_RS18460 0.39 -0.6

Or see this region's nucleotide sequence