Experiment: Bas48
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS02945 and ECOLIN_RS02950 are separated by 77 nucleotides ECOLIN_RS02950 and ECOLIN_RS02955 are separated by 89 nucleotides ECOLIN_RS02955 and ECOLIN_RS02960 are separated by 12 nucleotides ECOLIN_RS02960 and ECOLIN_RS02965 are separated by 99 nucleotides
ECOLIN_RS02945: ECOLIN_RS02945 - ureidoglycolate lyase, at 606,467 to 606,949
_RS02945
ECOLIN_RS02950: ECOLIN_RS02950 - HTH-type transcriptional repressor AllR, at 607,027 to 607,842
_RS02950
ECOLIN_RS02955: ECOLIN_RS02955 - glyoxylate carboligase, at 607,932 to 609,713
_RS02955
ECOLIN_RS02960: ECOLIN_RS02960 - hydroxypyruvate isomerase, at 609,726 to 610,502
_RS02960
ECOLIN_RS02965: ECOLIN_RS02965 - 2-hydroxy-3-oxopropionate reductase, at 610,602 to 611,480
_RS02965
Position (kb) 607
608
609
610 Strain fitness (log2 ratio) -1
0
1 at 607.023 kb on - strand at 607.026 kb on + strand at 607.266 kb on + strand, within ECOLIN_RS02950 at 607.274 kb on + strand, within ECOLIN_RS02950 at 607.319 kb on + strand, within ECOLIN_RS02950 at 607.319 kb on + strand, within ECOLIN_RS02950 at 607.358 kb on + strand, within ECOLIN_RS02950 at 607.647 kb on + strand, within ECOLIN_RS02950 at 607.679 kb on + strand, within ECOLIN_RS02950 at 607.679 kb on + strand, within ECOLIN_RS02950 at 607.703 kb on + strand, within ECOLIN_RS02950 at 607.703 kb on + strand, within ECOLIN_RS02950 at 607.965 kb on + strand at 608.228 kb on + strand, within ECOLIN_RS02955 at 608.416 kb on + strand, within ECOLIN_RS02955 at 608.459 kb on + strand, within ECOLIN_RS02955 at 608.459 kb on + strand, within ECOLIN_RS02955 at 608.463 kb on + strand, within ECOLIN_RS02955 at 608.463 kb on + strand, within ECOLIN_RS02955 at 608.463 kb on + strand, within ECOLIN_RS02955 at 608.463 kb on + strand, within ECOLIN_RS02955 at 608.805 kb on + strand, within ECOLIN_RS02955 at 608.805 kb on + strand, within ECOLIN_RS02955 at 609.096 kb on + strand, within ECOLIN_RS02955 at 609.950 kb on + strand, within ECOLIN_RS02960
Per-strain Table
Position Strand Gene LocusTag Fraction Bas48 remove 607,023 - -0.3 607,026 + -0.3 607,266 + ECOLIN_RS02950 0.29 +0.1 607,274 + ECOLIN_RS02950 0.30 +0.2 607,319 + ECOLIN_RS02950 0.36 -0.0 607,319 + ECOLIN_RS02950 0.36 -0.5 607,358 + ECOLIN_RS02950 0.41 +0.2 607,647 + ECOLIN_RS02950 0.76 -0.3 607,679 + ECOLIN_RS02950 0.80 -0.4 607,679 + ECOLIN_RS02950 0.80 +0.6 607,703 + ECOLIN_RS02950 0.83 -0.1 607,703 + ECOLIN_RS02950 0.83 +0.2 607,965 + +0.2 608,228 + ECOLIN_RS02955 0.17 +0.5 608,416 + ECOLIN_RS02955 0.27 -1.5 608,459 + ECOLIN_RS02955 0.30 +0.0 608,459 + ECOLIN_RS02955 0.30 +0.4 608,463 + ECOLIN_RS02955 0.30 +0.4 608,463 + ECOLIN_RS02955 0.30 +0.2 608,463 + ECOLIN_RS02955 0.30 -0.1 608,463 + ECOLIN_RS02955 0.30 +0.5 608,805 + ECOLIN_RS02955 0.49 -0.9 608,805 + ECOLIN_RS02955 0.49 +0.2 609,096 + ECOLIN_RS02955 0.65 -1.5 609,950 + ECOLIN_RS02960 0.29 -0.5
Or see this region's nucleotide sequence