Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS25890

Experiment: Bas48

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS25885 and ECOLIN_RS25890 are separated by 226 nucleotidesECOLIN_RS25890 and ECOLIN_RS33500 overlap by 11 nucleotides ECOLIN_RS25885: ECOLIN_RS25885 - Kiwa anti-phage protein KwaB-like domain-containing protein, at 5,196,356 to 5,197,498 _RS25885 ECOLIN_RS25890: ECOLIN_RS25890 - MobC family plasmid mobilization relaxosome protein, at 5,197,725 to 5,198,051 _RS25890 ECOLIN_RS33500: ECOLIN_RS33500 - relaxase/mobilization nuclease domain-containing protein, at 5,198,041 to 5,198,832 _RS33500 Position (kb) 5197 5198 5199Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5197.052 kb on - strand, within ECOLIN_RS25885at 5197.052 kb on - strand, within ECOLIN_RS25885at 5197.126 kb on - strand, within ECOLIN_RS25885at 5197.188 kb on + strand, within ECOLIN_RS25885at 5197.189 kb on - strand, within ECOLIN_RS25885at 5197.189 kb on - strand, within ECOLIN_RS25885at 5197.200 kb on - strand, within ECOLIN_RS25885at 5197.252 kb on + strand, within ECOLIN_RS25885at 5197.252 kb on + strand, within ECOLIN_RS25885at 5197.278 kb on - strand, within ECOLIN_RS25885at 5197.300 kb on + strand, within ECOLIN_RS25885at 5197.316 kb on - strand, within ECOLIN_RS25885at 5197.316 kb on - strand, within ECOLIN_RS25885at 5197.348 kb on + strand, within ECOLIN_RS25885at 5197.348 kb on + strand, within ECOLIN_RS25885at 5197.348 kb on + strand, within ECOLIN_RS25885at 5197.349 kb on - strand, within ECOLIN_RS25885at 5197.349 kb on - strand, within ECOLIN_RS25885at 5197.349 kb on - strand, within ECOLIN_RS25885at 5197.349 kb on - strand, within ECOLIN_RS25885at 5197.349 kb on - strand, within ECOLIN_RS25885at 5197.349 kb on - strand, within ECOLIN_RS25885at 5197.349 kb on - strand, within ECOLIN_RS25885at 5197.349 kb on - strand, within ECOLIN_RS25885at 5197.349 kb on - strand, within ECOLIN_RS25885at 5197.407 kb on - strandat 5197.407 kb on - strandat 5197.411 kb on - strandat 5197.454 kb on - strandat 5197.456 kb on + strandat 5197.457 kb on - strandat 5197.457 kb on - strandat 5197.457 kb on - strandat 5197.457 kb on - strandat 5197.457 kb on - strandat 5197.459 kb on + strandat 5197.459 kb on + strandat 5197.460 kb on - strandat 5197.466 kb on - strandat 5197.802 kb on + strand, within ECOLIN_RS25890at 5197.874 kb on + strand, within ECOLIN_RS25890at 5197.894 kb on + strand, within ECOLIN_RS25890at 5197.894 kb on + strand, within ECOLIN_RS25890at 5197.894 kb on + strand, within ECOLIN_RS25890at 5197.894 kb on + strand, within ECOLIN_RS25890at 5197.933 kb on + strand, within ECOLIN_RS25890at 5198.000 kb on + strand, within ECOLIN_RS25890at 5198.000 kb on + strand, within ECOLIN_RS25890at 5198.001 kb on - strand, within ECOLIN_RS25890at 5198.096 kb on - strandat 5198.197 kb on + strand, within ECOLIN_RS33500at 5198.197 kb on + strand, within ECOLIN_RS33500at 5198.197 kb on + strand, within ECOLIN_RS33500at 5198.197 kb on + strand, within ECOLIN_RS33500at 5198.197 kb on + strand, within ECOLIN_RS33500at 5198.197 kb on + strand, within ECOLIN_RS33500at 5198.198 kb on - strand, within ECOLIN_RS33500at 5198.198 kb on - strand, within ECOLIN_RS33500at 5198.199 kb on + strand, within ECOLIN_RS33500at 5198.199 kb on + strand, within ECOLIN_RS33500at 5198.199 kb on + strand, within ECOLIN_RS33500at 5198.199 kb on + strand, within ECOLIN_RS33500at 5198.199 kb on + strand, within ECOLIN_RS33500at 5198.199 kb on + strand, within ECOLIN_RS33500at 5198.200 kb on - strand, within ECOLIN_RS33500at 5198.200 kb on - strand, within ECOLIN_RS33500at 5198.295 kb on - strand, within ECOLIN_RS33500at 5198.295 kb on - strand, within ECOLIN_RS33500at 5198.298 kb on + strand, within ECOLIN_RS33500at 5198.309 kb on - strand, within ECOLIN_RS33500at 5198.309 kb on - strand, within ECOLIN_RS33500at 5198.309 kb on - strand, within ECOLIN_RS33500at 5198.407 kb on + strand, within ECOLIN_RS33500at 5198.407 kb on + strand, within ECOLIN_RS33500at 5198.407 kb on + strand, within ECOLIN_RS33500at 5198.407 kb on + strand, within ECOLIN_RS33500at 5198.408 kb on - strand, within ECOLIN_RS33500at 5198.408 kb on - strand, within ECOLIN_RS33500at 5198.408 kb on - strand, within ECOLIN_RS33500at 5198.611 kb on - strand, within ECOLIN_RS33500at 5198.632 kb on - strand, within ECOLIN_RS33500at 5198.714 kb on + strand, within ECOLIN_RS33500at 5198.714 kb on + strand, within ECOLIN_RS33500at 5198.715 kb on - strand, within ECOLIN_RS33500at 5198.715 kb on - strand, within ECOLIN_RS33500at 5198.728 kb on + strand, within ECOLIN_RS33500at 5198.728 kb on + strand, within ECOLIN_RS33500at 5198.728 kb on + strand, within ECOLIN_RS33500at 5198.728 kb on + strand, within ECOLIN_RS33500at 5198.728 kb on + strand, within ECOLIN_RS33500at 5198.729 kb on - strand, within ECOLIN_RS33500at 5198.729 kb on - strand, within ECOLIN_RS33500at 5198.748 kb on + strand, within ECOLIN_RS33500at 5198.837 kb on - strandat 5198.837 kb on - strandat 5198.837 kb on - strandat 5198.837 kb on - strandat 5198.871 kb on + strandat 5198.871 kb on + strandat 5198.871 kb on + strandat 5198.872 kb on - strandat 5198.872 kb on - strandat 5198.872 kb on - strandat 5198.907 kb on + strandat 5198.907 kb on + strandat 5198.908 kb on - strandat 5198.908 kb on - strandat 5198.916 kb on + strandat 5198.917 kb on - strandat 5198.945 kb on + strandat 5198.946 kb on - strandat 5198.946 kb on - strandat 5198.946 kb on - strandat 5198.958 kb on + strandat 5198.958 kb on + strandat 5198.958 kb on + strandat 5198.958 kb on + strandat 5198.958 kb on + strandat 5198.959 kb on - strandat 5198.959 kb on - strandat 5198.959 kb on - strandat 5198.959 kb on - strandat 5198.959 kb on - strandat 5198.992 kb on - strandat 5198.999 kb on + strandat 5198.999 kb on + strandat 5198.999 kb on + strandat 5199.000 kb on - strandat 5199.000 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas48
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5,197,052 - ECOLIN_RS25885 0.61 +0.0
5,197,052 - ECOLIN_RS25885 0.61 +0.4
5,197,126 - ECOLIN_RS25885 0.67 -0.3
5,197,188 + ECOLIN_RS25885 0.73 -0.1
5,197,189 - ECOLIN_RS25885 0.73 +0.1
5,197,189 - ECOLIN_RS25885 0.73 -0.0
5,197,200 - ECOLIN_RS25885 0.74 +0.0
5,197,252 + ECOLIN_RS25885 0.78 -1.0
5,197,252 + ECOLIN_RS25885 0.78 -0.2
5,197,278 - ECOLIN_RS25885 0.81 +0.0
5,197,300 + ECOLIN_RS25885 0.83 +0.8
5,197,316 - ECOLIN_RS25885 0.84 +0.0
5,197,316 - ECOLIN_RS25885 0.84 -0.0
5,197,348 + ECOLIN_RS25885 0.87 +0.1
5,197,348 + ECOLIN_RS25885 0.87 -0.2
5,197,348 + ECOLIN_RS25885 0.87 -0.0
5,197,349 - ECOLIN_RS25885 0.87 +0.1
5,197,349 - ECOLIN_RS25885 0.87 +0.0
5,197,349 - ECOLIN_RS25885 0.87 +0.1
5,197,349 - ECOLIN_RS25885 0.87 +0.0
5,197,349 - ECOLIN_RS25885 0.87 -0.1
5,197,349 - ECOLIN_RS25885 0.87 +0.1
5,197,349 - ECOLIN_RS25885 0.87 +0.2
5,197,349 - ECOLIN_RS25885 0.87 +0.2
5,197,349 - ECOLIN_RS25885 0.87 -0.0
5,197,407 - -0.1
5,197,407 - +0.4
5,197,411 - +0.0
5,197,454 - +0.1
5,197,456 + +0.0
5,197,457 - -0.1
5,197,457 - +0.0
5,197,457 - +0.2
5,197,457 - +0.4
5,197,457 - +0.2
5,197,459 + -0.1
5,197,459 + +0.1
5,197,460 - +0.0
5,197,466 - -0.1
5,197,802 + ECOLIN_RS25890 0.24 +0.2
5,197,874 + ECOLIN_RS25890 0.46 +0.2
5,197,894 + ECOLIN_RS25890 0.52 +0.1
5,197,894 + ECOLIN_RS25890 0.52 +0.5
5,197,894 + ECOLIN_RS25890 0.52 +0.2
5,197,894 + ECOLIN_RS25890 0.52 +0.5
5,197,933 + ECOLIN_RS25890 0.64 +0.1
5,198,000 + ECOLIN_RS25890 0.84 +0.1
5,198,000 + ECOLIN_RS25890 0.84 +0.0
5,198,001 - ECOLIN_RS25890 0.84 +0.4
5,198,096 - +0.5
5,198,197 + ECOLIN_RS33500 0.20 +0.2
5,198,197 + ECOLIN_RS33500 0.20 +0.4
5,198,197 + ECOLIN_RS33500 0.20 +0.2
5,198,197 + ECOLIN_RS33500 0.20 -0.1
5,198,197 + ECOLIN_RS33500 0.20 -0.1
5,198,197 + ECOLIN_RS33500 0.20 +0.3
5,198,198 - ECOLIN_RS33500 0.20 +0.3
5,198,198 - ECOLIN_RS33500 0.20 +0.2
5,198,199 + ECOLIN_RS33500 0.20 +0.3
5,198,199 + ECOLIN_RS33500 0.20 +0.2
5,198,199 + ECOLIN_RS33500 0.20 +0.2
5,198,199 + ECOLIN_RS33500 0.20 +0.0
5,198,199 + ECOLIN_RS33500 0.20 +0.5
5,198,199 + ECOLIN_RS33500 0.20 +1.6
5,198,200 - ECOLIN_RS33500 0.20 +0.4
5,198,200 - ECOLIN_RS33500 0.20 +0.9
5,198,295 - ECOLIN_RS33500 0.32 +0.3
5,198,295 - ECOLIN_RS33500 0.32 -0.2
5,198,298 + ECOLIN_RS33500 0.32 +0.1
5,198,309 - ECOLIN_RS33500 0.34 +0.3
5,198,309 - ECOLIN_RS33500 0.34 +0.8
5,198,309 - ECOLIN_RS33500 0.34 -0.3
5,198,407 + ECOLIN_RS33500 0.46 +0.4
5,198,407 + ECOLIN_RS33500 0.46 +0.4
5,198,407 + ECOLIN_RS33500 0.46 +0.4
5,198,407 + ECOLIN_RS33500 0.46 +0.7
5,198,408 - ECOLIN_RS33500 0.46 +0.3
5,198,408 - ECOLIN_RS33500 0.46 +0.0
5,198,408 - ECOLIN_RS33500 0.46 +0.5
5,198,611 - ECOLIN_RS33500 0.72 +0.7
5,198,632 - ECOLIN_RS33500 0.75 +0.4
5,198,714 + ECOLIN_RS33500 0.85 +0.2
5,198,714 + ECOLIN_RS33500 0.85 -0.1
5,198,715 - ECOLIN_RS33500 0.85 +0.6
5,198,715 - ECOLIN_RS33500 0.85 +0.5
5,198,728 + ECOLIN_RS33500 0.87 +0.4
5,198,728 + ECOLIN_RS33500 0.87 +0.2
5,198,728 + ECOLIN_RS33500 0.87 +0.1
5,198,728 + ECOLIN_RS33500 0.87 +2.0
5,198,728 + ECOLIN_RS33500 0.87 +0.7
5,198,729 - ECOLIN_RS33500 0.87 +0.5
5,198,729 - ECOLIN_RS33500 0.87 +0.4
5,198,748 + ECOLIN_RS33500 0.89 +1.2
5,198,837 - +0.6
5,198,837 - +0.4
5,198,837 - +1.2
5,198,837 - +0.7
5,198,871 + +0.4
5,198,871 + +0.4
5,198,871 + -4.5
5,198,872 - -0.7
5,198,872 - +1.0
5,198,872 - -1.2
5,198,907 + +0.2
5,198,907 + -0.3
5,198,908 - -0.4
5,198,908 - -0.1
5,198,916 + +0.1
5,198,917 - -0.2
5,198,945 + -0.2
5,198,946 - -0.1
5,198,946 - +0.2
5,198,946 - +0.0
5,198,958 + -0.1
5,198,958 + -0.3
5,198,958 + -0.1
5,198,958 + -0.1
5,198,958 + -0.1
5,198,959 - +0.1
5,198,959 - +0.1
5,198,959 - +0.0
5,198,959 - -1.0
5,198,959 - -0.4
5,198,992 - +0.1
5,198,999 + -0.2
5,198,999 + -0.1
5,198,999 + -0.2
5,199,000 - -0.1
5,199,000 - +0.2

Or see this region's nucleotide sequence