Experiment: Bas48
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS24895 and ECOLIN_RS24900 are separated by 67 nucleotides ECOLIN_RS24900 and ECOLIN_RS24905 are separated by 64 nucleotides ECOLIN_RS24905 and ECOLIN_RS24910 overlap by 4 nucleotides ECOLIN_RS24910 and ECOLIN_RS24915 are separated by 9 nucleotides
ECOLIN_RS24895: ECOLIN_RS24895 - MFS transporter, at 5,005,266 to 5,006,444
_RS24895
ECOLIN_RS24900: ECOLIN_RS24900 - YjiK family protein, at 5,006,512 to 5,007,372
_RS24900
ECOLIN_RS24905: ECOLIN_RS24905 - DUF3343 domain-containing protein, at 5,007,437 to 5,007,694
_RS24905
ECOLIN_RS24910: ECOLIN_RS24910 - putative 2-hydroxyacyl-CoA dehydratase activator YjiL, at 5,007,691 to 5,008,458
_RS24910
ECOLIN_RS24915: ECOLIN_RS24915 - double-cubane-cluster-containing anaerobic reductase, at 5,008,468 to 5,009,619
_RS24915
Position (kb) 5007
5008 Strain fitness (log2 ratio) -2
-1
0
1 at 5006.567 kb on + strand at 5006.568 kb on - strand at 5006.571 kb on + strand at 5006.572 kb on - strand at 5006.572 kb on - strand at 5006.572 kb on - strand at 5006.661 kb on + strand, within ECOLIN_RS24900 at 5006.818 kb on - strand, within ECOLIN_RS24900 at 5006.818 kb on - strand, within ECOLIN_RS24900 at 5006.999 kb on + strand, within ECOLIN_RS24900 at 5006.999 kb on + strand, within ECOLIN_RS24900 at 5007.195 kb on + strand, within ECOLIN_RS24900 at 5007.195 kb on + strand, within ECOLIN_RS24900 at 5007.195 kb on + strand, within ECOLIN_RS24900 at 5007.198 kb on + strand, within ECOLIN_RS24900 at 5007.199 kb on - strand, within ECOLIN_RS24900 at 5007.301 kb on - strand at 5007.301 kb on - strand at 5007.651 kb on - strand, within ECOLIN_RS24905 at 5007.685 kb on - strand at 5007.984 kb on + strand, within ECOLIN_RS24910 at 5008.339 kb on - strand, within ECOLIN_RS24910 at 5008.550 kb on + strand at 5008.550 kb on + strand at 5008.551 kb on - strand at 5008.585 kb on - strand, within ECOLIN_RS24915 at 5008.640 kb on - strand, within ECOLIN_RS24915
Per-strain Table
Position Strand Gene LocusTag Fraction Bas48 remove 5,006,567 + +0.0 5,006,568 - -0.2 5,006,571 + +1.4 5,006,572 - +0.1 5,006,572 - +0.3 5,006,572 - +0.2 5,006,661 + ECOLIN_RS24900 0.17 -0.2 5,006,818 - ECOLIN_RS24900 0.36 +0.5 5,006,818 - ECOLIN_RS24900 0.36 -0.7 5,006,999 + ECOLIN_RS24900 0.57 +0.9 5,006,999 + ECOLIN_RS24900 0.57 +0.9 5,007,195 + ECOLIN_RS24900 0.79 +0.0 5,007,195 + ECOLIN_RS24900 0.79 -0.4 5,007,195 + ECOLIN_RS24900 0.79 -0.6 5,007,198 + ECOLIN_RS24900 0.80 -0.5 5,007,199 - ECOLIN_RS24900 0.80 +0.2 5,007,301 - +0.1 5,007,301 - -1.2 5,007,651 - ECOLIN_RS24905 0.83 +0.2 5,007,685 - -1.9 5,007,984 + ECOLIN_RS24910 0.38 +0.5 5,008,339 - ECOLIN_RS24910 0.84 +0.6 5,008,550 + -2.1 5,008,550 + +0.6 5,008,551 - +1.0 5,008,585 - ECOLIN_RS24915 0.10 +0.7 5,008,640 - ECOLIN_RS24915 0.15 +0.5
Or see this region's nucleotide sequence