Experiment: Bas48
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS17505 and ECOLIN_RS17510 are separated by 0 nucleotides ECOLIN_RS17510 and ECOLIN_RS17515 are separated by 204 nucleotides ECOLIN_RS17515 and ECOLIN_RS17525 are separated by 147 nucleotides ECOLIN_RS17525 and ECOLIN_RS17530 are separated by 5 nucleotides
ECOLIN_RS17505: ECOLIN_RS17505 - DUF1249 family protein, at 3,527,395 to 3,527,817
_RS17505
ECOLIN_RS17510: ECOLIN_RS17510 - ADP-ribose diphosphatase, at 3,527,818 to 3,528,447
_RS17510
ECOLIN_RS17515: ECOLIN_RS17515 - outer membrane channel protein TolC, at 3,528,652 to 3,530,133
_RS17515
ECOLIN_RS17525: ECOLIN_RS17525 - DUF1190 family protein, at 3,530,281 to 3,530,952
_RS17525
ECOLIN_RS17530: ECOLIN_RS17530 - glutathionylspermidine synthase family protein, at 3,530,958 to 3,532,118
_RS17530
Position (kb) 3528
3529
3530
3531 Strain fitness (log2 ratio) -1
0
1 at 3527.820 kb on - strand at 3527.919 kb on - strand, within ECOLIN_RS17510 at 3527.953 kb on - strand, within ECOLIN_RS17510 at 3528.019 kb on - strand, within ECOLIN_RS17510 at 3528.019 kb on - strand, within ECOLIN_RS17510 at 3528.259 kb on + strand, within ECOLIN_RS17510 at 3528.345 kb on + strand, within ECOLIN_RS17510 at 3528.356 kb on - strand, within ECOLIN_RS17510 at 3528.374 kb on + strand, within ECOLIN_RS17510 at 3528.401 kb on - strand at 3528.441 kb on + strand at 3528.548 kb on + strand at 3528.627 kb on + strand at 3529.127 kb on + strand, within ECOLIN_RS17515
Per-strain Table
Position Strand Gene LocusTag Fraction Bas48 remove 3,527,820 - -0.2 3,527,919 - ECOLIN_RS17510 0.16 -0.4 3,527,953 - ECOLIN_RS17510 0.21 -0.4 3,528,019 - ECOLIN_RS17510 0.32 -0.3 3,528,019 - ECOLIN_RS17510 0.32 -0.1 3,528,259 + ECOLIN_RS17510 0.70 +0.5 3,528,345 + ECOLIN_RS17510 0.84 +0.2 3,528,356 - ECOLIN_RS17510 0.85 -0.1 3,528,374 + ECOLIN_RS17510 0.88 -0.4 3,528,401 - +0.1 3,528,441 + +0.2 3,528,548 + -0.1 3,528,627 + -0.4 3,529,127 + ECOLIN_RS17515 0.32 +0.8
Or see this region's nucleotide sequence