Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS10915

Experiment: Bas48

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS10900 and ECOLIN_RS31480 are separated by 295 nucleotidesECOLIN_RS31480 and ECOLIN_RS10910 overlap by 14 nucleotidesECOLIN_RS10910 and ECOLIN_RS10915 are separated by 67 nucleotidesECOLIN_RS10915 and ECOLIN_RS10920 are separated by 229 nucleotidesECOLIN_RS10920 and ECOLIN_RS10925 overlap by 4 nucleotides ECOLIN_RS10900: ECOLIN_RS10900 - UvrY/SirA/GacA family response regulator transcription factor, at 2,119,542 to 2,120,198 _RS10900 ECOLIN_RS31480: ECOLIN_RS31480 - protein YecU, at 2,120,494 to 2,120,670 _RS31480 ECOLIN_RS10910: ECOLIN_RS10910 - DUF2594 family protein YecF, at 2,120,657 to 2,120,881 _RS10910 ECOLIN_RS10915: ECOLIN_RS10915 - transcriptional regulator SdiA, at 2,120,949 to 2,121,671 _RS10915 ECOLIN_RS10920: ECOLIN_RS10920 - L-cystine ABC transporter ATP-binding protein TcyN, at 2,121,901 to 2,122,653 _RS10920 ECOLIN_RS10925: ECOLIN_RS10925 - cystine ABC transporter permease, at 2,122,650 to 2,123,318 _RS10925 Position (kb) 2120 2121 2122Strain fitness (log2 ratio) -1 0 1at 2121.393 kb on + strand, within ECOLIN_RS10915at 2122.555 kb on - strand, within ECOLIN_RS10920

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas48
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2,121,393 + ECOLIN_RS10915 0.61 -0.5
2,122,555 - ECOLIN_RS10920 0.87 +0.4

Or see this region's nucleotide sequence