Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS08840

Experiment: Bas48

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECOLIN_RS08835 and ECOLIN_RS08840 are separated by 11 nucleotidesECOLIN_RS08840 and ECOLIN_RS08845 are separated by 205 nucleotidesECOLIN_RS08845 and ECOLIN_RS08850 are separated by 134 nucleotides ECOLIN_RS08835: ECOLIN_RS08835 - Zn-dependent oxidoreductase, at 1,741,660 to 1,742,679 _RS08835 ECOLIN_RS08840: ECOLIN_RS08840 - starvation-sensing protein RspA, at 1,742,691 to 1,743,905 _RS08840 ECOLIN_RS08845: ECOLIN_RS08845 - YnfA family protein, at 1,744,111 to 1,744,437 _RS08845 ECOLIN_RS08850: ECOLIN_RS08850 - DUF1283 family protein, at 1,744,572 to 1,744,913 _RS08850 Position (kb) 1742 1743 1744Strain fitness (log2 ratio) -1 0 1at 1743.502 kb on + strand, within ECOLIN_RS08840at 1744.420 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas48
remove
1,743,502 + ECOLIN_RS08840 0.67 -0.3
1,744,420 + -0.9

Or see this region's nucleotide sequence