Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS05705

Experiment: Bas48

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS05695 and ECOLIN_RS05700 are separated by 40 nucleotidesECOLIN_RS05700 and ECOLIN_RS05705 are separated by 69 nucleotidesECOLIN_RS05705 and ECOLIN_RS05710 are separated by 12 nucleotidesECOLIN_RS05710 and ECOLIN_RS05715 are separated by 21 nucleotides ECOLIN_RS05695: ECOLIN_RS05695 - S/F1C fimbrial minor subunit SfaD, at 1,162,156 to 1,162,695 _RS05695 ECOLIN_RS05700: ECOLIN_RS05700 - S/F1C fimbrial biogenesis chaperone SfaE/FocC, at 1,162,736 to 1,163,431 _RS05700 ECOLIN_RS05705: ECOLIN_RS05705 - S/F1C fimbrial usher SfaF/FocD, at 1,163,501 to 1,166,131 _RS05705 ECOLIN_RS05710: ECOLIN_RS05710 - S/F1C fimbrial adhesin minor pilin SfaG/FocF, at 1,166,144 to 1,166,671 _RS05710 ECOLIN_RS05715: ECOLIN_RS05715 - F1C fimbria minor subunit FocG, at 1,166,693 to 1,167,196 _RS05715 Position (kb) 1163 1164 1165 1166 1167Strain fitness (log2 ratio) -1 0 1at 1163.704 kb on + strandat 1163.704 kb on + strandat 1164.192 kb on - strand, within ECOLIN_RS05705at 1164.258 kb on + strand, within ECOLIN_RS05705at 1164.562 kb on - strand, within ECOLIN_RS05705at 1165.029 kb on + strand, within ECOLIN_RS05705at 1165.810 kb on - strand, within ECOLIN_RS05705at 1166.318 kb on + strand, within ECOLIN_RS05710

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas48
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1,163,704 + +0.4
1,163,704 + -0.5
1,164,192 - ECOLIN_RS05705 0.26 +1.0
1,164,258 + ECOLIN_RS05705 0.29 +0.4
1,164,562 - ECOLIN_RS05705 0.40 -0.2
1,165,029 + ECOLIN_RS05705 0.58 -0.5
1,165,810 - ECOLIN_RS05705 0.88 +0.6
1,166,318 + ECOLIN_RS05710 0.33 +0.4

Or see this region's nucleotide sequence