Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS03000

Experiment: Bas48

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS02995 and ECOLIN_RS03000 are separated by 21 nucleotidesECOLIN_RS03000 and ECOLIN_RS03005 are separated by 316 nucleotides ECOLIN_RS02995: ECOLIN_RS02995 - allantoate deiminase, at 617,974 to 619,209 _RS02995 ECOLIN_RS03000: ECOLIN_RS03000 - ureidoglycolate dehydrogenase, at 619,231 to 620,280 _RS03000 ECOLIN_RS03005: ECOLIN_RS03005 - acyl-CoA synthetase FdrA, at 620,597 to 622,264 _RS03005 Position (kb) 619 620 621Strain fitness (log2 ratio) -1 0 1at 618.305 kb on - strand, within ECOLIN_RS02995at 618.661 kb on - strand, within ECOLIN_RS02995at 619.081 kb on - strand, within ECOLIN_RS02995at 620.740 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas48
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618,305 - ECOLIN_RS02995 0.27 -0.2
618,661 - ECOLIN_RS02995 0.56 +0.3
619,081 - ECOLIN_RS02995 0.90 -0.2
620,740 + +1.7

Or see this region's nucleotide sequence