Experiment: P1vir
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS21650 and ECOLIN_RS21655 overlap by 4 nucleotides ECOLIN_RS21655 and ECOLIN_RS21660 are separated by 19 nucleotides ECOLIN_RS21660 and ECOLIN_RS21665 are separated by 64 nucleotides
ECOLIN_RS21650: ECOLIN_RS21650 - acetolactate synthase 2 catalytic subunit, at 4,348,228 to 4,349,874
_RS21650
ECOLIN_RS21655: ECOLIN_RS21655 - acetolactate synthase 2 small subunit, at 4,349,871 to 4,350,134
_RS21655
ECOLIN_RS21660: ECOLIN_RS21660 - branched-chain-amino-acid transaminase, at 4,350,154 to 4,351,083
_RS21660
ECOLIN_RS21665: ECOLIN_RS21665 - dihydroxy-acid dehydratase, at 4,351,148 to 4,352,998
_RS21665
Position (kb) 4350
4351
4352 Strain fitness (log2 ratio) -1
0
1 at 4349.157 kb on - strand, within ECOLIN_RS21650 at 4349.169 kb on - strand, within ECOLIN_RS21650 at 4349.189 kb on + strand, within ECOLIN_RS21650 at 4349.190 kb on - strand, within ECOLIN_RS21650 at 4349.190 kb on - strand, within ECOLIN_RS21650 at 4349.190 kb on - strand, within ECOLIN_RS21650 at 4349.201 kb on + strand, within ECOLIN_RS21650 at 4349.201 kb on + strand, within ECOLIN_RS21650 at 4349.280 kb on + strand, within ECOLIN_RS21650 at 4349.500 kb on - strand, within ECOLIN_RS21650 at 4349.582 kb on + strand, within ECOLIN_RS21650 at 4349.845 kb on - strand at 4349.868 kb on - strand at 4349.933 kb on - strand, within ECOLIN_RS21655 at 4349.976 kb on - strand, within ECOLIN_RS21655 at 4350.005 kb on - strand, within ECOLIN_RS21655 at 4350.005 kb on - strand, within ECOLIN_RS21655 at 4350.005 kb on - strand, within ECOLIN_RS21655 at 4350.046 kb on + strand, within ECOLIN_RS21655 at 4350.046 kb on + strand, within ECOLIN_RS21655 at 4350.047 kb on - strand, within ECOLIN_RS21655 at 4350.062 kb on - strand, within ECOLIN_RS21655 at 4350.149 kb on + strand at 4350.175 kb on + strand at 4350.175 kb on + strand at 4350.175 kb on + strand at 4350.305 kb on + strand, within ECOLIN_RS21660 at 4350.306 kb on - strand, within ECOLIN_RS21660 at 4350.324 kb on + strand, within ECOLIN_RS21660 at 4350.325 kb on - strand, within ECOLIN_RS21660 at 4350.439 kb on + strand, within ECOLIN_RS21660 at 4350.439 kb on + strand, within ECOLIN_RS21660 at 4350.541 kb on + strand, within ECOLIN_RS21660 at 4350.542 kb on - strand, within ECOLIN_RS21660 at 4350.642 kb on + strand, within ECOLIN_RS21660 at 4350.642 kb on + strand, within ECOLIN_RS21660 at 4350.646 kb on + strand, within ECOLIN_RS21660 at 4350.647 kb on - strand, within ECOLIN_RS21660 at 4350.724 kb on + strand, within ECOLIN_RS21660 at 4350.724 kb on + strand, within ECOLIN_RS21660 at 4350.724 kb on + strand, within ECOLIN_RS21660 at 4350.916 kb on - strand, within ECOLIN_RS21660 at 4350.956 kb on + strand, within ECOLIN_RS21660 at 4351.064 kb on + strand at 4351.064 kb on + strand at 4351.074 kb on + strand at 4351.085 kb on + strand at 4351.142 kb on + strand at 4351.142 kb on + strand at 4351.142 kb on + strand at 4351.142 kb on + strand at 4351.142 kb on + strand at 4351.143 kb on - strand at 4351.147 kb on + strand at 4351.147 kb on + strand at 4351.148 kb on - strand at 4351.153 kb on + strand at 4351.153 kb on + strand at 4351.153 kb on + strand at 4351.189 kb on + strand at 4351.190 kb on - strand at 4351.421 kb on + strand, within ECOLIN_RS21665 at 4351.421 kb on + strand, within ECOLIN_RS21665 at 4351.463 kb on + strand, within ECOLIN_RS21665 at 4351.463 kb on + strand, within ECOLIN_RS21665 at 4351.463 kb on + strand, within ECOLIN_RS21665 at 4351.463 kb on + strand, within ECOLIN_RS21665 at 4351.464 kb on - strand, within ECOLIN_RS21665 at 4351.464 kb on - strand, within ECOLIN_RS21665 at 4351.464 kb on - strand, within ECOLIN_RS21665 at 4351.464 kb on - strand, within ECOLIN_RS21665 at 4351.464 kb on - strand, within ECOLIN_RS21665 at 4351.464 kb on - strand, within ECOLIN_RS21665 at 4351.465 kb on + strand, within ECOLIN_RS21665 at 4351.466 kb on - strand, within ECOLIN_RS21665 at 4351.883 kb on + strand, within ECOLIN_RS21665 at 4352.001 kb on + strand, within ECOLIN_RS21665 at 4352.070 kb on + strand, within ECOLIN_RS21665
Per-strain Table
Position Strand Gene LocusTag Fraction P1vir remove 4,349,157 - ECOLIN_RS21650 0.56 +0.2 4,349,169 - ECOLIN_RS21650 0.57 -0.4 4,349,189 + ECOLIN_RS21650 0.58 +0.7 4,349,190 - ECOLIN_RS21650 0.58 -0.3 4,349,190 - ECOLIN_RS21650 0.58 -0.6 4,349,190 - ECOLIN_RS21650 0.58 +0.1 4,349,201 + ECOLIN_RS21650 0.59 +0.3 4,349,201 + ECOLIN_RS21650 0.59 +0.1 4,349,280 + ECOLIN_RS21650 0.64 +0.2 4,349,500 - ECOLIN_RS21650 0.77 +0.0 4,349,582 + ECOLIN_RS21650 0.82 -0.0 4,349,845 - +0.2 4,349,868 - -0.2 4,349,933 - ECOLIN_RS21655 0.23 -0.2 4,349,976 - ECOLIN_RS21655 0.40 +0.1 4,350,005 - ECOLIN_RS21655 0.51 -0.2 4,350,005 - ECOLIN_RS21655 0.51 -0.3 4,350,005 - ECOLIN_RS21655 0.51 +0.3 4,350,046 + ECOLIN_RS21655 0.66 -0.3 4,350,046 + ECOLIN_RS21655 0.66 -0.3 4,350,047 - ECOLIN_RS21655 0.67 +0.5 4,350,062 - ECOLIN_RS21655 0.72 -0.0 4,350,149 + +1.2 4,350,175 + +0.4 4,350,175 + -0.3 4,350,175 + +0.5 4,350,305 + ECOLIN_RS21660 0.16 -0.2 4,350,306 - ECOLIN_RS21660 0.16 +0.7 4,350,324 + ECOLIN_RS21660 0.18 +0.3 4,350,325 - ECOLIN_RS21660 0.18 +0.5 4,350,439 + ECOLIN_RS21660 0.31 +0.5 4,350,439 + ECOLIN_RS21660 0.31 -0.3 4,350,541 + ECOLIN_RS21660 0.42 +0.2 4,350,542 - ECOLIN_RS21660 0.42 +0.2 4,350,642 + ECOLIN_RS21660 0.52 +0.3 4,350,642 + ECOLIN_RS21660 0.52 -0.1 4,350,646 + ECOLIN_RS21660 0.53 +0.4 4,350,647 - ECOLIN_RS21660 0.53 +0.2 4,350,724 + ECOLIN_RS21660 0.61 -0.4 4,350,724 + ECOLIN_RS21660 0.61 +0.4 4,350,724 + ECOLIN_RS21660 0.61 +0.0 4,350,916 - ECOLIN_RS21660 0.82 +0.6 4,350,956 + ECOLIN_RS21660 0.86 +0.3 4,351,064 + -0.4 4,351,064 + -0.3 4,351,074 + +0.2 4,351,085 + +0.0 4,351,142 + +0.3 4,351,142 + +1.0 4,351,142 + +0.0 4,351,142 + -0.0 4,351,142 + +0.3 4,351,143 - +0.7 4,351,147 + +0.0 4,351,147 + -0.1 4,351,148 - -0.6 4,351,153 + +0.2 4,351,153 + +0.5 4,351,153 + +0.0 4,351,189 + +0.1 4,351,190 - +0.0 4,351,421 + ECOLIN_RS21665 0.15 -0.1 4,351,421 + ECOLIN_RS21665 0.15 +0.6 4,351,463 + ECOLIN_RS21665 0.17 +1.6 4,351,463 + ECOLIN_RS21665 0.17 -0.7 4,351,463 + ECOLIN_RS21665 0.17 +0.1 4,351,463 + ECOLIN_RS21665 0.17 -1.0 4,351,464 - ECOLIN_RS21665 0.17 +0.9 4,351,464 - ECOLIN_RS21665 0.17 -0.2 4,351,464 - ECOLIN_RS21665 0.17 -0.0 4,351,464 - ECOLIN_RS21665 0.17 -0.6 4,351,464 - ECOLIN_RS21665 0.17 +0.6 4,351,464 - ECOLIN_RS21665 0.17 +0.0 4,351,465 + ECOLIN_RS21665 0.17 +0.6 4,351,466 - ECOLIN_RS21665 0.17 +0.3 4,351,883 + ECOLIN_RS21665 0.40 +0.0 4,352,001 + ECOLIN_RS21665 0.46 -0.2 4,352,070 + ECOLIN_RS21665 0.50 -0.2
Or see this region's nucleotide sequence