Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS15800

Experiment: P1vir

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS15790 and ECOLIN_RS15795 are separated by 71 nucleotidesECOLIN_RS15795 and ECOLIN_RS15800 are separated by 2 nucleotidesECOLIN_RS15800 and ECOLIN_RS15805 overlap by 1 nucleotides ECOLIN_RS15790: ECOLIN_RS15790 - phosphoglycerate dehydrogenase, at 3,186,144 to 3,187,091 _RS15790 ECOLIN_RS15795: ECOLIN_RS15795 - SIS domain-containing protein, at 3,187,163 to 3,187,759 _RS15795 ECOLIN_RS15800: ECOLIN_RS15800 - PatB family C-S lyase, at 3,187,762 to 3,188,937 _RS15800 ECOLIN_RS15805: ECOLIN_RS15805 - PTS transporter subunit EIIC, at 3,188,937 to 3,190,517 _RS15805 Position (kb) 3187 3188 3189Strain fitness (log2 ratio) -1 0 1at 3189.853 kb on + strand, within ECOLIN_RS15805

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Per-strain Table

Position Strand Gene LocusTag Fraction P1vir
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3,189,853 + ECOLIN_RS15805 0.58 +0.1

Or see this region's nucleotide sequence