Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS12665

Experiment: P1vir

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS12660 and ECOLIN_RS12665 are separated by 93 nucleotidesECOLIN_RS12665 and ECOLIN_RS12670 overlap by 13 nucleotides ECOLIN_RS12660: ECOLIN_RS12660 - NupC/NupG family nucleoside CNT transporter, at 2,518,641 to 2,519,891 _RS12660 ECOLIN_RS12665: ECOLIN_RS12665 - 'pseudouridine-5'-phosphate glycosidase' pseudo=_no_value transl_table=11, at 2,519,985 to 2,520,925 _RS12665 ECOLIN_RS12670: ECOLIN_RS12670 - pseudouridine kinase, at 2,520,913 to 2,521,854 _RS12670 Position (kb) 2519 2520 2521Strain fitness (log2 ratio) -1 0 1at 2519.238 kb on - strand, within ECOLIN_RS12660at 2519.885 kb on + strandat 2521.123 kb on - strand, within ECOLIN_RS12670

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Per-strain Table

Position Strand Gene LocusTag Fraction P1vir
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2,519,238 - ECOLIN_RS12660 0.48 +0.5
2,519,885 + -1.1
2,521,123 - ECOLIN_RS12670 0.22 -0.2

Or see this region's nucleotide sequence