Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS10665

Experiment: P1vir

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS10650 and ECOLIN_RS10655 are separated by 1 nucleotidesECOLIN_RS10655 and ECOLIN_RS32895 are separated by 190 nucleotidesECOLIN_RS32895 and ECOLIN_RS10665 are separated by 23 nucleotidesECOLIN_RS10665 and ECOLIN_RS10670 are separated by 21 nucleotidesECOLIN_RS10670 and ECOLIN_RS10675 are separated by 40 nucleotidesECOLIN_RS10675 and ECOLIN_RS10680 are separated by 58 nucleotides ECOLIN_RS10650: ECOLIN_RS10650 - hypothetical protein, at 2,075,542 to 2,075,889 _RS10650 ECOLIN_RS10655: ECOLIN_RS10655 - hypothetical protein, at 2,075,891 to 2,076,199 _RS10655 ECOLIN_RS32895: ECOLIN_RS32895 - DUF550 domain-containing protein, at 2,076,390 to 2,076,659 _RS32895 ECOLIN_RS10665: ECOLIN_RS10665 - DUF4222 domain-containing protein, at 2,076,683 to 2,076,937 _RS10665 ECOLIN_RS10670: ECOLIN_RS10670 - 3'-5' exonuclease, at 2,076,959 to 2,077,528 _RS10670 ECOLIN_RS10675: ECOLIN_RS10675 - excisionase family protein, at 2,077,569 to 2,077,805 _RS10675 ECOLIN_RS10680: ECOLIN_RS10680 - site-specific integrase, at 2,077,864 to 2,079,177 _RS10680 Position (kb) 2076 2077Strain fitness (log2 ratio) -1 0 1at 2075.928 kb on - strand, within ECOLIN_RS10655at 2077.260 kb on - strand, within ECOLIN_RS10670at 2077.762 kb on + strand, within ECOLIN_RS10675

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Per-strain Table

Position Strand Gene LocusTag Fraction P1vir
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2,075,928 - ECOLIN_RS10655 0.12 +0.1
2,077,260 - ECOLIN_RS10670 0.53 +0.4
2,077,762 + ECOLIN_RS10675 0.81 -1.3

Or see this region's nucleotide sequence