Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS07905

Experiment: P1vir

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS07895 and ECOLIN_RS07900 are separated by 18 nucleotidesECOLIN_RS07900 and ECOLIN_RS07905 are separated by 9 nucleotidesECOLIN_RS07905 and ECOLIN_RS07910 overlap by 4 nucleotides ECOLIN_RS07895: ECOLIN_RS07895 - zinc-binding alcohol dehydrogenase, at 1,543,132 to 1,544,184 _RS07895 ECOLIN_RS07900: ECOLIN_RS07900 - sugar phosphate isomerase/epimerase, at 1,544,203 to 1,544,991 _RS07900 ECOLIN_RS07905: ECOLIN_RS07905 - Gfo/Idh/MocA family oxidoreductase, at 1,545,001 to 1,546,056 _RS07905 ECOLIN_RS07910: ECOLIN_RS07910 - kojibiose phosphorylase, at 1,546,053 to 1,548,320 _RS07910 Position (kb) 1545 1546 1547Strain fitness (log2 ratio) -1 0 1at 1545.947 kb on + strand, within ECOLIN_RS07905at 1545.954 kb on + strandat 1545.989 kb on - strandat 1545.989 kb on - strandat 1546.943 kb on - strand, within ECOLIN_RS07910

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Per-strain Table

Position Strand Gene LocusTag Fraction P1vir
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1,545,947 + ECOLIN_RS07905 0.90 +0.1
1,545,954 + +0.3
1,545,989 - -1.1
1,545,989 - -0.3
1,546,943 - ECOLIN_RS07910 0.39 -0.7

Or see this region's nucleotide sequence