Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS02805

Experiment: P1vir

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS02795 and ECOLIN_RS02800 are separated by 52 nucleotidesECOLIN_RS02800 and ECOLIN_RS02805 overlap by 1 nucleotidesECOLIN_RS02805 and ECOLIN_RS02810 are separated by 109 nucleotides ECOLIN_RS02795: ECOLIN_RS02795 - DNA polymerase III subunit gamma/tau, at 571,957 to 573,888 _RS02795 ECOLIN_RS02800: ECOLIN_RS02800 - YbaB/EbfC family nucleoid-associated protein, at 573,941 to 574,270 _RS02800 ECOLIN_RS02805: ECOLIN_RS02805 - recombination mediator RecR, at 574,270 to 574,875 _RS02805 ECOLIN_RS02810: ECOLIN_RS02810 - molecular chaperone HtpG, at 574,985 to 576,859 _RS02810 Position (kb) 574 575Strain fitness (log2 ratio) -2 -1 0 1 2at 573.940 kb on + strandat 574.735 kb on + strand, within ECOLIN_RS02805at 574.958 kb on - strandat 574.982 kb on + strandat 575.089 kb on + strandat 575.366 kb on + strand, within ECOLIN_RS02810at 575.720 kb on + strand, within ECOLIN_RS02810

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Per-strain Table

Position Strand Gene LocusTag Fraction P1vir
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573,940 + +1.9
574,735 + ECOLIN_RS02805 0.77 +0.3
574,958 - -1.8
574,982 + -1.1
575,089 + -0.4
575,366 + ECOLIN_RS02810 0.20 -0.8
575,720 + ECOLIN_RS02810 0.39 -1.1

Or see this region's nucleotide sequence