Experiment: P1vir
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS02490 and ECOLIN_RS02495 are separated by 298 nucleotides ECOLIN_RS02495 and ECOLIN_RS02500 are separated by 150 nucleotides ECOLIN_RS02500 and ECOLIN_RS02505 are separated by 3 nucleotides
ECOLIN_RS02490: ECOLIN_RS02490 - nucleoside-specific channel-forming protein Tsx, at 510,560 to 511,444
_RS02490
ECOLIN_RS02495: ECOLIN_RS02495 - DUF3251 domain-containing protein, at 511,743 to 512,282
_RS02495
ECOLIN_RS02500: ECOLIN_RS02500 - transcriptional regulator NrdR, at 512,433 to 512,882
_RS02500
ECOLIN_RS02505: ECOLIN_RS02505 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 512,886 to 513,989
_RS02505
Position (kb) 511
512
513 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 510.761 kb on - strand, within ECOLIN_RS02490 at 510.832 kb on - strand, within ECOLIN_RS02490 at 511.008 kb on + strand, within ECOLIN_RS02490 at 511.051 kb on - strand, within ECOLIN_RS02490 at 511.097 kb on - strand, within ECOLIN_RS02490 at 511.264 kb on - strand, within ECOLIN_RS02490 at 511.449 kb on - strand at 511.529 kb on - strand at 511.739 kb on - strand at 512.035 kb on - strand, within ECOLIN_RS02495 at 512.282 kb on + strand at 512.312 kb on + strand at 512.379 kb on - strand at 512.399 kb on + strand at 512.465 kb on + strand at 512.587 kb on + strand, within ECOLIN_RS02500
Per-strain Table
Position Strand Gene LocusTag Fraction P1vir remove 510,761 - ECOLIN_RS02490 0.23 +0.3 510,832 - ECOLIN_RS02490 0.31 -0.1 511,008 + ECOLIN_RS02490 0.51 -0.1 511,051 - ECOLIN_RS02490 0.55 -0.6 511,097 - ECOLIN_RS02490 0.61 -0.4 511,264 - ECOLIN_RS02490 0.80 +0.5 511,449 - -1.2 511,529 - -4.9 511,739 - -0.2 512,035 - ECOLIN_RS02495 0.54 +0.3 512,282 + +0.7 512,312 + -0.4 512,379 - -0.0 512,399 + -0.8 512,465 + +0.7 512,587 + ECOLIN_RS02500 0.34 +0.0
Or see this region's nucleotide sequence