Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS07175

Experiment: Bas45

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECOLIN_RS07170 and ECOLIN_RS07175 are separated by 221 nucleotidesECOLIN_RS07175 and ECOLIN_RS07180 are separated by 162 nucleotides ECOLIN_RS07170: ECOLIN_RS07170 - Na(+)/H(+) antiporter NhaB, at 1,396,424 to 1,397,965 _RS07170 ECOLIN_RS07175: ECOLIN_RS07175 - fatty acid metabolism transcriptional regulator FadR, at 1,398,187 to 1,398,906 _RS07175 ECOLIN_RS07180: ECOLIN_RS07180 - SpoVR family protein, at 1,399,069 to 1,400,601 _RS07180 Position (kb) 1398 1399Strain fitness (log2 ratio) -1 0 1at 1397.404 kb on - strand, within ECOLIN_RS07170at 1397.404 kb on - strand, within ECOLIN_RS07170at 1397.618 kb on + strand, within ECOLIN_RS07170at 1397.618 kb on + strand, within ECOLIN_RS07170at 1398.477 kb on + strand, within ECOLIN_RS07175

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas45
remove
1,397,404 - ECOLIN_RS07170 0.64 +0.0
1,397,404 - ECOLIN_RS07170 0.64 +0.5
1,397,618 + ECOLIN_RS07170 0.77 +0.3
1,397,618 + ECOLIN_RS07170 0.77 +0.6
1,398,477 + ECOLIN_RS07175 0.40 -0.1

Or see this region's nucleotide sequence