Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS06065

Experiment: Bas45

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECOLIN_RS06050 and ECOLIN_RS06055 are separated by 58 nucleotidesECOLIN_RS06055 and ECOLIN_RS06060 are separated by 120 nucleotidesECOLIN_RS06060 and ECOLIN_RS06065 are separated by 94 nucleotidesECOLIN_RS06065 and ECOLIN_RS06070 overlap by 59 nucleotides ECOLIN_RS06050: ECOLIN_RS06050 - curli major subunit CsgA, at 1,224,146 to 1,224,604 _RS06050 ECOLIN_RS06055: ECOLIN_RS06055 - curli assembly chaperone CsgC, at 1,224,663 to 1,224,995 _RS06055 ECOLIN_RS06060: ECOLIN_RS06060 - protein YmdA, at 1,225,116 to 1,225,427 _RS06060 ECOLIN_RS06065: ECOLIN_RS06065 - O-acetyl-ADP-ribose deacetylase, at 1,225,522 to 1,226,055 _RS06065 ECOLIN_RS06070: ECOLIN_RS06070 - cardiolipin synthase ClsC, at 1,225,997 to 1,227,478 _RS06070 Position (kb) 1225 1226 1227Strain fitness (log2 ratio) -1 0 1at 1225.673 kb on + strand, within ECOLIN_RS06065at 1225.985 kb on - strand, within ECOLIN_RS06065at 1226.186 kb on - strand, within ECOLIN_RS06070

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas45
remove
1,225,673 + ECOLIN_RS06065 0.28 +0.0
1,225,985 - ECOLIN_RS06065 0.87 +1.1
1,226,186 - ECOLIN_RS06070 0.13 -0.8

Or see this region's nucleotide sequence