Experiment: Bas45
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS00780 and ECOLIN_RS00785 are separated by 363 nucleotides ECOLIN_RS00785 and ECOLIN_RS00790 overlap by 4 nucleotides ECOLIN_RS00790 and ECOLIN_RS00795 are separated by 59 nucleotides
ECOLIN_RS00780: ECOLIN_RS00780 - fimbrial protein, at 163,719 to 164,309
_RS00780
ECOLIN_RS00785: ECOLIN_RS00785 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 164,673 to 165,152
_RS00785
ECOLIN_RS00790: ECOLIN_RS00790 - polynucleotide adenylyltransferase PcnB, at 165,149 to 166,546
_RS00790
ECOLIN_RS00795: ECOLIN_RS00795 - tRNA glutamyl-Q(34) synthetase GluQRS, at 166,606 to 167,502
_RS00795
Position (kb) 165
166
167 Strain fitness (log2 ratio) -1
0
1
2 at 165.140 kb on - strand at 165.362 kb on - strand, within ECOLIN_RS00790 at 165.410 kb on - strand, within ECOLIN_RS00790 at 165.410 kb on - strand, within ECOLIN_RS00790 at 165.410 kb on - strand, within ECOLIN_RS00790 at 165.410 kb on - strand, within ECOLIN_RS00790 at 165.620 kb on - strand, within ECOLIN_RS00790 at 165.620 kb on - strand, within ECOLIN_RS00790 at 165.786 kb on - strand, within ECOLIN_RS00790 at 165.922 kb on + strand, within ECOLIN_RS00790 at 165.923 kb on - strand, within ECOLIN_RS00790 at 166.039 kb on - strand, within ECOLIN_RS00790 at 166.042 kb on - strand, within ECOLIN_RS00790 at 166.390 kb on - strand, within ECOLIN_RS00790 at 166.529 kb on - strand at 166.547 kb on - strand at 166.729 kb on + strand, within ECOLIN_RS00795 at 166.730 kb on - strand, within ECOLIN_RS00795 at 166.859 kb on + strand, within ECOLIN_RS00795 at 166.986 kb on + strand, within ECOLIN_RS00795 at 167.020 kb on - strand, within ECOLIN_RS00795 at 167.111 kb on - strand, within ECOLIN_RS00795 at 167.212 kb on + strand, within ECOLIN_RS00795 at 167.213 kb on - strand, within ECOLIN_RS00795 at 167.294 kb on + strand, within ECOLIN_RS00795
Per-strain Table
Position Strand Gene LocusTag Fraction Bas45 remove 165,140 - -1.3 165,362 - ECOLIN_RS00790 0.15 +2.5 165,410 - ECOLIN_RS00790 0.19 +1.9 165,410 - ECOLIN_RS00790 0.19 +1.7 165,410 - ECOLIN_RS00790 0.19 +1.0 165,410 - ECOLIN_RS00790 0.19 +2.1 165,620 - ECOLIN_RS00790 0.34 +2.7 165,620 - ECOLIN_RS00790 0.34 +0.7 165,786 - ECOLIN_RS00790 0.46 +0.6 165,922 + ECOLIN_RS00790 0.55 +0.6 165,923 - ECOLIN_RS00790 0.55 +1.4 166,039 - ECOLIN_RS00790 0.64 +2.1 166,042 - ECOLIN_RS00790 0.64 +1.2 166,390 - ECOLIN_RS00790 0.89 +1.8 166,529 - +0.6 166,547 - +1.1 166,729 + ECOLIN_RS00795 0.14 +0.5 166,730 - ECOLIN_RS00795 0.14 -0.2 166,859 + ECOLIN_RS00795 0.28 -0.2 166,986 + ECOLIN_RS00795 0.42 +0.9 167,020 - ECOLIN_RS00795 0.46 -0.3 167,111 - ECOLIN_RS00795 0.56 +0.1 167,212 + ECOLIN_RS00795 0.68 +0.3 167,213 - ECOLIN_RS00795 0.68 +0.6 167,294 + ECOLIN_RS00795 0.77 +0.3
Or see this region's nucleotide sequence