Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04127

Experiment: D-Glc (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04126 and MPMX20_04127 are separated by 9 nucleotidesMPMX20_04127 and MPMX20_04128 are separated by 105 nucleotidesMPMX20_04128 and MPMX20_04129 overlap by 4 nucleotides MPMX20_04126: MPMX20_04126 - Glutamate synthase [NADPH] large chain, at 4,322,524 to 4,326,984 _04126 MPMX20_04127: MPMX20_04127 - Glutamate synthase [NADPH] small chain, at 4,326,994 to 4,328,412 _04127 MPMX20_04128: MPMX20_04128 - hypothetical protein, at 4,328,518 to 4,329,078 _04128 MPMX20_04129: MPMX20_04129 - Outer membrane usher protein YraJ, at 4,329,075 to 4,331,495 _04129 Position (kb) 4326 4327 4328 4329Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 4326.017 kb on + strand, within MPMX20_04126at 4326.025 kb on - strand, within MPMX20_04126at 4326.035 kb on - strand, within MPMX20_04126at 4326.058 kb on - strand, within MPMX20_04126at 4326.073 kb on - strand, within MPMX20_04126at 4326.115 kb on + strand, within MPMX20_04126at 4326.120 kb on + strand, within MPMX20_04126at 4326.224 kb on + strand, within MPMX20_04126at 4326.224 kb on + strand, within MPMX20_04126at 4326.278 kb on - strand, within MPMX20_04126at 4326.295 kb on + strand, within MPMX20_04126at 4326.354 kb on - strand, within MPMX20_04126at 4326.354 kb on - strand, within MPMX20_04126at 4326.359 kb on - strand, within MPMX20_04126at 4326.377 kb on + strand, within MPMX20_04126at 4326.408 kb on + strand, within MPMX20_04126at 4326.431 kb on - strand, within MPMX20_04126at 4326.464 kb on + strand, within MPMX20_04126at 4326.472 kb on - strand, within MPMX20_04126at 4326.508 kb on + strand, within MPMX20_04126at 4326.638 kb on + strandat 4326.693 kb on - strandat 4326.717 kb on - strandat 4326.746 kb on + strandat 4326.771 kb on - strandat 4326.794 kb on + strandat 4326.851 kb on + strandat 4326.900 kb on + strandat 4326.908 kb on - strandat 4326.908 kb on - strandat 4326.950 kb on - strandat 4326.956 kb on + strandat 4326.956 kb on + strandat 4326.964 kb on - strandat 4327.005 kb on + strandat 4327.031 kb on - strandat 4327.113 kb on - strandat 4327.113 kb on - strandat 4327.145 kb on - strand, within MPMX20_04127at 4327.149 kb on + strand, within MPMX20_04127at 4327.149 kb on + strand, within MPMX20_04127at 4327.149 kb on + strand, within MPMX20_04127at 4327.150 kb on - strand, within MPMX20_04127at 4327.157 kb on - strand, within MPMX20_04127at 4327.181 kb on + strand, within MPMX20_04127at 4327.204 kb on - strand, within MPMX20_04127at 4327.204 kb on - strand, within MPMX20_04127at 4327.204 kb on - strand, within MPMX20_04127at 4327.232 kb on + strand, within MPMX20_04127at 4327.246 kb on + strand, within MPMX20_04127at 4327.246 kb on + strand, within MPMX20_04127at 4327.288 kb on + strand, within MPMX20_04127at 4327.296 kb on - strand, within MPMX20_04127at 4327.310 kb on - strand, within MPMX20_04127at 4327.313 kb on + strand, within MPMX20_04127at 4327.465 kb on + strand, within MPMX20_04127at 4327.465 kb on + strand, within MPMX20_04127at 4327.465 kb on + strand, within MPMX20_04127at 4327.465 kb on + strand, within MPMX20_04127at 4327.465 kb on + strand, within MPMX20_04127at 4327.465 kb on + strand, within MPMX20_04127at 4327.465 kb on + strand, within MPMX20_04127at 4327.465 kb on + strand, within MPMX20_04127at 4327.465 kb on + strand, within MPMX20_04127at 4327.473 kb on - strand, within MPMX20_04127at 4327.473 kb on - strand, within MPMX20_04127at 4327.473 kb on - strand, within MPMX20_04127at 4327.483 kb on + strand, within MPMX20_04127at 4327.483 kb on - strand, within MPMX20_04127at 4327.564 kb on + strand, within MPMX20_04127at 4327.592 kb on - strand, within MPMX20_04127at 4327.683 kb on + strand, within MPMX20_04127at 4327.720 kb on - strand, within MPMX20_04127at 4327.759 kb on + strand, within MPMX20_04127at 4327.832 kb on + strand, within MPMX20_04127at 4327.888 kb on + strand, within MPMX20_04127at 4327.888 kb on + strand, within MPMX20_04127at 4327.901 kb on - strand, within MPMX20_04127at 4328.118 kb on - strand, within MPMX20_04127at 4328.155 kb on - strand, within MPMX20_04127at 4328.155 kb on - strand, within MPMX20_04127at 4328.215 kb on - strand, within MPMX20_04127at 4328.226 kb on + strand, within MPMX20_04127at 4328.229 kb on - strand, within MPMX20_04127at 4328.231 kb on + strand, within MPMX20_04127at 4328.231 kb on + strand, within MPMX20_04127at 4328.231 kb on + strand, within MPMX20_04127at 4328.231 kb on + strand, within MPMX20_04127at 4328.236 kb on + strand, within MPMX20_04127at 4328.239 kb on - strand, within MPMX20_04127at 4328.239 kb on - strand, within MPMX20_04127at 4328.239 kb on - strand, within MPMX20_04127at 4328.239 kb on - strand, within MPMX20_04127at 4328.321 kb on + strandat 4328.336 kb on + strandat 4328.336 kb on + strandat 4328.336 kb on + strandat 4328.336 kb on + strandat 4328.336 kb on + strandat 4328.344 kb on - strandat 4328.344 kb on - strandat 4328.346 kb on + strandat 4328.362 kb on + strandat 4328.389 kb on + strandat 4328.389 kb on + strandat 4328.397 kb on - strandat 4328.397 kb on - strandat 4328.397 kb on - strandat 4328.397 kb on - strandat 4328.399 kb on + strandat 4328.399 kb on + strandat 4328.399 kb on + strandat 4328.399 kb on + strandat 4328.464 kb on - strandat 4328.492 kb on + strandat 4328.523 kb on - strandat 4328.598 kb on + strand, within MPMX20_04128at 4328.611 kb on - strand, within MPMX20_04128at 4328.649 kb on + strand, within MPMX20_04128at 4328.695 kb on - strand, within MPMX20_04128at 4328.695 kb on - strand, within MPMX20_04128at 4328.697 kb on + strand, within MPMX20_04128at 4328.761 kb on - strand, within MPMX20_04128at 4328.761 kb on - strand, within MPMX20_04128at 4328.801 kb on + strand, within MPMX20_04128at 4328.809 kb on - strand, within MPMX20_04128at 4328.843 kb on + strand, within MPMX20_04128at 4328.843 kb on - strand, within MPMX20_04128at 4328.851 kb on - strand, within MPMX20_04128at 4328.851 kb on - strand, within MPMX20_04128at 4328.851 kb on - strand, within MPMX20_04128at 4328.851 kb on - strand, within MPMX20_04128at 4328.926 kb on + strand, within MPMX20_04128at 4329.015 kb on + strand, within MPMX20_04128at 4329.024 kb on - strandat 4329.024 kb on - strandat 4329.049 kb on + strandat 4329.103 kb on - strandat 4329.135 kb on + strandat 4329.145 kb on + strandat 4329.145 kb on + strandat 4329.145 kb on + strandat 4329.153 kb on - strandat 4329.153 kb on - strandat 4329.187 kb on + strandat 4329.224 kb on - strandat 4329.246 kb on + strandat 4329.246 kb on + strandat 4329.255 kb on - strandat 4329.277 kb on + strandat 4329.305 kb on + strandat 4329.305 kb on + strandat 4329.305 kb on + strandat 4329.305 kb on + strandat 4329.305 kb on + strandat 4329.305 kb on + strandat 4329.313 kb on - strandat 4329.313 kb on - strandat 4329.313 kb on - strandat 4329.313 kb on - strandat 4329.313 kb on - strandat 4329.313 kb on - strandat 4329.313 kb on - strandat 4329.313 kb on - strandat 4329.333 kb on + strand, within MPMX20_04129at 4329.360 kb on + strand, within MPMX20_04129at 4329.366 kb on + strand, within MPMX20_04129at 4329.374 kb on - strand, within MPMX20_04129at 4329.402 kb on - strand, within MPMX20_04129at 4329.404 kb on + strand, within MPMX20_04129at 4329.404 kb on + strand, within MPMX20_04129at 4329.412 kb on - strand, within MPMX20_04129

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glc (C)
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4,326,017 + MPMX20_04126 0.78 -2.6
4,326,025 - MPMX20_04126 0.78 -3.8
4,326,035 - MPMX20_04126 0.79 -2.8
4,326,058 - MPMX20_04126 0.79 -4.3
4,326,073 - MPMX20_04126 0.80 -4.5
4,326,115 + MPMX20_04126 0.80 -4.6
4,326,120 + MPMX20_04126 0.81 -4.9
4,326,224 + MPMX20_04126 0.83 -1.8
4,326,224 + MPMX20_04126 0.83 -2.4
4,326,278 - MPMX20_04126 0.84 -1.1
4,326,295 + MPMX20_04126 0.85 -3.3
4,326,354 - MPMX20_04126 0.86 -3.7
4,326,354 - MPMX20_04126 0.86 -5.2
4,326,359 - MPMX20_04126 0.86 -3.9
4,326,377 + MPMX20_04126 0.86 -2.6
4,326,408 + MPMX20_04126 0.87 -4.7
4,326,431 - MPMX20_04126 0.88 -4.0
4,326,464 + MPMX20_04126 0.88 -4.9
4,326,472 - MPMX20_04126 0.89 -0.8
4,326,508 + MPMX20_04126 0.89 -3.5
4,326,638 + -4.1
4,326,693 - -3.7
4,326,717 - -2.9
4,326,746 + -3.6
4,326,771 - +0.0
4,326,794 + -3.1
4,326,851 + -3.9
4,326,900 + -1.5
4,326,908 - -0.3
4,326,908 - -1.8
4,326,950 - -4.2
4,326,956 + -0.6
4,326,956 + -0.0
4,326,964 - -2.3
4,327,005 + -0.3
4,327,031 - -4.4
4,327,113 - -2.0
4,327,113 - -1.9
4,327,145 - MPMX20_04127 0.11 -2.3
4,327,149 + MPMX20_04127 0.11 -4.2
4,327,149 + MPMX20_04127 0.11 -4.5
4,327,149 + MPMX20_04127 0.11 -3.7
4,327,150 - MPMX20_04127 0.11 -0.3
4,327,157 - MPMX20_04127 0.11 -2.6
4,327,181 + MPMX20_04127 0.13 -3.6
4,327,204 - MPMX20_04127 0.15 -4.5
4,327,204 - MPMX20_04127 0.15 -4.9
4,327,204 - MPMX20_04127 0.15 -4.4
4,327,232 + MPMX20_04127 0.17 -1.6
4,327,246 + MPMX20_04127 0.18 -0.8
4,327,246 + MPMX20_04127 0.18 -2.9
4,327,288 + MPMX20_04127 0.21 -4.0
4,327,296 - MPMX20_04127 0.21 -1.6
4,327,310 - MPMX20_04127 0.22 -4.5
4,327,313 + MPMX20_04127 0.22 -2.6
4,327,465 + MPMX20_04127 0.33 -5.0
4,327,465 + MPMX20_04127 0.33 -4.4
4,327,465 + MPMX20_04127 0.33 -2.1
4,327,465 + MPMX20_04127 0.33 -4.3
4,327,465 + MPMX20_04127 0.33 -4.8
4,327,465 + MPMX20_04127 0.33 -2.5
4,327,465 + MPMX20_04127 0.33 -3.9
4,327,465 + MPMX20_04127 0.33 -4.8
4,327,465 + MPMX20_04127 0.33 -3.3
4,327,473 - MPMX20_04127 0.34 -3.8
4,327,473 - MPMX20_04127 0.34 -0.6
4,327,473 - MPMX20_04127 0.34 -2.4
4,327,483 + MPMX20_04127 0.34 -4.7
4,327,483 - MPMX20_04127 0.34 -2.7
4,327,564 + MPMX20_04127 0.40 -3.1
4,327,592 - MPMX20_04127 0.42 -2.3
4,327,683 + MPMX20_04127 0.49 -0.3
4,327,720 - MPMX20_04127 0.51 -0.6
4,327,759 + MPMX20_04127 0.54 -1.4
4,327,832 + MPMX20_04127 0.59 -4.3
4,327,888 + MPMX20_04127 0.63 -4.0
4,327,888 + MPMX20_04127 0.63 -4.2
4,327,901 - MPMX20_04127 0.64 -1.6
4,328,118 - MPMX20_04127 0.79 -3.3
4,328,155 - MPMX20_04127 0.82 -3.7
4,328,155 - MPMX20_04127 0.82 -3.2
4,328,215 - MPMX20_04127 0.86 -4.2
4,328,226 + MPMX20_04127 0.87 -5.3
4,328,229 - MPMX20_04127 0.87 -0.6
4,328,231 + MPMX20_04127 0.87 -0.6
4,328,231 + MPMX20_04127 0.87 -3.9
4,328,231 + MPMX20_04127 0.87 -3.4
4,328,231 + MPMX20_04127 0.87 -4.3
4,328,236 + MPMX20_04127 0.88 -4.0
4,328,239 - MPMX20_04127 0.88 -3.5
4,328,239 - MPMX20_04127 0.88 -4.0
4,328,239 - MPMX20_04127 0.88 -3.6
4,328,239 - MPMX20_04127 0.88 -1.8
4,328,321 + -2.5
4,328,336 + -4.7
4,328,336 + -3.1
4,328,336 + -1.7
4,328,336 + -3.3
4,328,336 + -5.8
4,328,344 - -3.6
4,328,344 - -4.2
4,328,346 + -1.0
4,328,362 + -3.7
4,328,389 + -4.7
4,328,389 + -3.8
4,328,397 - -1.9
4,328,397 - -3.1
4,328,397 - -2.6
4,328,397 - -3.9
4,328,399 + +3.6
4,328,399 + +0.1
4,328,399 + -1.2
4,328,399 + -1.0
4,328,464 - +0.2
4,328,492 + +1.1
4,328,523 - +0.5
4,328,598 + MPMX20_04128 0.14 +0.3
4,328,611 - MPMX20_04128 0.17 +0.3
4,328,649 + MPMX20_04128 0.23 +0.9
4,328,695 - MPMX20_04128 0.32 -1.0
4,328,695 - MPMX20_04128 0.32 -0.3
4,328,697 + MPMX20_04128 0.32 -0.5
4,328,761 - MPMX20_04128 0.43 -0.5
4,328,761 - MPMX20_04128 0.43 -1.2
4,328,801 + MPMX20_04128 0.50 -3.1
4,328,809 - MPMX20_04128 0.52 -0.1
4,328,843 + MPMX20_04128 0.58 -1.3
4,328,843 - MPMX20_04128 0.58 -2.5
4,328,851 - MPMX20_04128 0.59 -0.7
4,328,851 - MPMX20_04128 0.59 +1.0
4,328,851 - MPMX20_04128 0.59 -0.0
4,328,851 - MPMX20_04128 0.59 -2.7
4,328,926 + MPMX20_04128 0.73 -0.0
4,329,015 + MPMX20_04128 0.89 -0.0
4,329,024 - +1.4
4,329,024 - +1.0
4,329,049 + -0.1
4,329,103 - -1.0
4,329,135 + +0.0
4,329,145 + +0.3
4,329,145 + +0.0
4,329,145 + -0.5
4,329,153 - +0.7
4,329,153 - +1.1
4,329,187 + -0.5
4,329,224 - +0.6
4,329,246 + -0.8
4,329,246 + +0.1
4,329,255 - +0.6
4,329,277 + -0.8
4,329,305 + -0.4
4,329,305 + +0.7
4,329,305 + +0.9
4,329,305 + +0.8
4,329,305 + -0.8
4,329,305 + -0.1
4,329,313 - +2.5
4,329,313 - +0.5
4,329,313 - +0.1
4,329,313 - +0.2
4,329,313 - -0.6
4,329,313 - +0.5
4,329,313 - -0.8
4,329,313 - -0.3
4,329,333 + MPMX20_04129 0.11 -1.1
4,329,360 + MPMX20_04129 0.12 +1.2
4,329,366 + MPMX20_04129 0.12 -0.8
4,329,374 - MPMX20_04129 0.12 +0.3
4,329,402 - MPMX20_04129 0.14 +0.0
4,329,404 + MPMX20_04129 0.14 +0.4
4,329,404 + MPMX20_04129 0.14 -0.1
4,329,412 - MPMX20_04129 0.14 +0.1

Or see this region's nucleotide sequence