Strain Fitness in Pseudomonas aeruginosa PA14 around IKLFDK_07465

Experiment: PA14_MA1_S

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIKLFDK_07460 and IKLFDK_07465 are separated by 37 nucleotidesIKLFDK_07465 and IKLFDK_07470 are separated by 372 nucleotides IKLFDK_07460: IKLFDK_07460 - cationic peptide resistance protein CprA, at 1,596,082 to 1,597,239 _07460 IKLFDK_07465: IKLFDK_07465 - Methyl-accepting chemotaxis protein Aer, at 1,597,277 to 1,598,842 _07465 IKLFDK_07470: IKLFDK_07470 - aconitate hydratase AcnA, at 1,599,215 to 1,601,947 _07470 Position (kb) 1597 1598 1599Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1596.616 kb on + strand, within IKLFDK_07460at 1596.616 kb on + strand, within IKLFDK_07460at 1596.616 kb on + strand, within IKLFDK_07460at 1596.616 kb on + strand, within IKLFDK_07460at 1596.617 kb on - strand, within IKLFDK_07460at 1596.617 kb on - strand, within IKLFDK_07460at 1596.617 kb on - strand, within IKLFDK_07460at 1596.617 kb on - strand, within IKLFDK_07460at 1596.617 kb on - strand, within IKLFDK_07460at 1596.715 kb on - strand, within IKLFDK_07460at 1596.715 kb on - strand, within IKLFDK_07460at 1596.715 kb on - strand, within IKLFDK_07460at 1596.739 kb on - strand, within IKLFDK_07460at 1596.827 kb on - strand, within IKLFDK_07460at 1596.827 kb on - strand, within IKLFDK_07460at 1596.883 kb on + strand, within IKLFDK_07460at 1596.883 kb on + strand, within IKLFDK_07460at 1596.883 kb on + strand, within IKLFDK_07460at 1596.883 kb on + strand, within IKLFDK_07460at 1596.884 kb on - strand, within IKLFDK_07460at 1596.884 kb on - strand, within IKLFDK_07460at 1596.888 kb on + strand, within IKLFDK_07460at 1596.888 kb on + strand, within IKLFDK_07460at 1596.888 kb on + strand, within IKLFDK_07460at 1596.888 kb on + strand, within IKLFDK_07460at 1596.888 kb on + strand, within IKLFDK_07460at 1596.889 kb on - strand, within IKLFDK_07460at 1596.889 kb on - strand, within IKLFDK_07460at 1596.889 kb on - strand, within IKLFDK_07460at 1596.889 kb on - strand, within IKLFDK_07460at 1596.889 kb on - strand, within IKLFDK_07460at 1596.889 kb on - strand, within IKLFDK_07460at 1596.889 kb on - strand, within IKLFDK_07460at 1596.889 kb on - strand, within IKLFDK_07460at 1597.081 kb on + strand, within IKLFDK_07460at 1597.081 kb on + strand, within IKLFDK_07460at 1597.081 kb on + strand, within IKLFDK_07460at 1597.082 kb on - strand, within IKLFDK_07460at 1597.105 kb on + strand, within IKLFDK_07460at 1597.105 kb on + strand, within IKLFDK_07460at 1597.105 kb on + strand, within IKLFDK_07460at 1597.105 kb on + strand, within IKLFDK_07460at 1597.105 kb on + strand, within IKLFDK_07460at 1597.106 kb on - strand, within IKLFDK_07460at 1597.106 kb on - strand, within IKLFDK_07460at 1597.106 kb on - strand, within IKLFDK_07460at 1597.106 kb on - strand, within IKLFDK_07460at 1597.106 kb on - strand, within IKLFDK_07460at 1597.106 kb on - strand, within IKLFDK_07460at 1597.168 kb on + strandat 1597.305 kb on + strandat 1597.305 kb on + strandat 1597.306 kb on - strandat 1597.471 kb on - strand, within IKLFDK_07465at 1597.573 kb on + strand, within IKLFDK_07465at 1597.573 kb on + strand, within IKLFDK_07465at 1597.573 kb on + strand, within IKLFDK_07465at 1597.573 kb on + strand, within IKLFDK_07465at 1597.573 kb on + strand, within IKLFDK_07465at 1597.573 kb on + strand, within IKLFDK_07465at 1597.574 kb on - strand, within IKLFDK_07465at 1597.574 kb on - strand, within IKLFDK_07465at 1597.574 kb on - strand, within IKLFDK_07465at 1597.574 kb on - strand, within IKLFDK_07465at 1597.574 kb on - strand, within IKLFDK_07465at 1597.574 kb on - strand, within IKLFDK_07465at 1597.574 kb on - strand, within IKLFDK_07465at 1597.574 kb on - strand, within IKLFDK_07465at 1597.577 kb on + strand, within IKLFDK_07465at 1597.577 kb on + strand, within IKLFDK_07465at 1597.577 kb on + strand, within IKLFDK_07465at 1597.577 kb on + strand, within IKLFDK_07465at 1597.577 kb on + strand, within IKLFDK_07465at 1597.577 kb on + strand, within IKLFDK_07465at 1597.577 kb on + strand, within IKLFDK_07465at 1597.577 kb on + strand, within IKLFDK_07465at 1597.578 kb on - strand, within IKLFDK_07465at 1597.578 kb on - strand, within IKLFDK_07465at 1597.578 kb on - strand, within IKLFDK_07465at 1597.578 kb on - strand, within IKLFDK_07465at 1598.089 kb on - strand, within IKLFDK_07465at 1598.190 kb on + strand, within IKLFDK_07465at 1598.190 kb on + strand, within IKLFDK_07465at 1598.190 kb on + strand, within IKLFDK_07465at 1598.190 kb on + strand, within IKLFDK_07465at 1598.190 kb on + strand, within IKLFDK_07465at 1598.190 kb on + strand, within IKLFDK_07465at 1598.190 kb on + strand, within IKLFDK_07465at 1598.191 kb on - strand, within IKLFDK_07465at 1598.191 kb on - strand, within IKLFDK_07465at 1598.191 kb on - strand, within IKLFDK_07465at 1598.191 kb on - strand, within IKLFDK_07465at 1598.191 kb on - strand, within IKLFDK_07465at 1598.191 kb on - strand, within IKLFDK_07465at 1598.341 kb on + strand, within IKLFDK_07465at 1598.341 kb on + strand, within IKLFDK_07465at 1598.342 kb on - strand, within IKLFDK_07465at 1598.454 kb on + strand, within IKLFDK_07465at 1598.454 kb on + strand, within IKLFDK_07465at 1598.454 kb on + strand, within IKLFDK_07465at 1598.455 kb on - strand, within IKLFDK_07465at 1598.455 kb on - strand, within IKLFDK_07465at 1598.535 kb on + strand, within IKLFDK_07465at 1598.535 kb on + strand, within IKLFDK_07465at 1598.536 kb on - strand, within IKLFDK_07465at 1598.536 kb on - strand, within IKLFDK_07465at 1598.536 kb on - strand, within IKLFDK_07465at 1598.536 kb on - strand, within IKLFDK_07465at 1598.550 kb on + strand, within IKLFDK_07465at 1598.550 kb on + strand, within IKLFDK_07465at 1598.550 kb on + strand, within IKLFDK_07465at 1598.550 kb on + strand, within IKLFDK_07465at 1598.551 kb on - strand, within IKLFDK_07465at 1598.565 kb on + strand, within IKLFDK_07465at 1598.748 kb on + strandat 1598.748 kb on + strandat 1598.748 kb on + strandat 1598.748 kb on + strandat 1598.749 kb on - strandat 1598.749 kb on - strandat 1598.749 kb on - strandat 1598.752 kb on + strandat 1598.752 kb on + strandat 1598.752 kb on + strandat 1598.752 kb on + strandat 1598.752 kb on + strandat 1598.752 kb on + strandat 1598.753 kb on - strandat 1598.753 kb on - strandat 1598.753 kb on - strandat 1598.753 kb on - strandat 1598.753 kb on - strandat 1598.753 kb on - strandat 1598.869 kb on + strandat 1598.870 kb on - strandat 1598.937 kb on + strandat 1598.937 kb on + strandat 1598.941 kb on + strandat 1598.941 kb on + strandat 1598.942 kb on - strandat 1598.942 kb on - strandat 1598.942 kb on - strandat 1598.942 kb on - strandat 1598.942 kb on - strandat 1598.942 kb on - strandat 1598.979 kb on + strandat 1599.008 kb on + strandat 1599.008 kb on + strandat 1599.008 kb on + strandat 1599.008 kb on + strandat 1599.008 kb on + strandat 1599.008 kb on + strandat 1599.008 kb on + strandat 1599.008 kb on + strandat 1599.008 kb on + strandat 1599.009 kb on - strandat 1599.009 kb on - strandat 1599.009 kb on - strandat 1599.237 kb on + strandat 1599.237 kb on + strandat 1599.237 kb on + strandat 1599.237 kb on + strandat 1599.238 kb on - strandat 1599.238 kb on - strandat 1599.238 kb on - strandat 1599.238 kb on - strandat 1599.264 kb on + strandat 1599.264 kb on + strandat 1599.264 kb on + strandat 1599.264 kb on + strandat 1599.264 kb on + strandat 1599.265 kb on - strandat 1599.265 kb on - strandat 1599.265 kb on - strandat 1599.538 kb on + strand, within IKLFDK_07470at 1599.538 kb on + strand, within IKLFDK_07470at 1599.539 kb on - strand, within IKLFDK_07470at 1599.576 kb on + strand, within IKLFDK_07470at 1599.577 kb on - strand, within IKLFDK_07470at 1599.639 kb on + strand, within IKLFDK_07470at 1599.639 kb on + strand, within IKLFDK_07470at 1599.640 kb on - strand, within IKLFDK_07470at 1599.669 kb on + strand, within IKLFDK_07470at 1599.669 kb on + strand, within IKLFDK_07470at 1599.669 kb on + strand, within IKLFDK_07470at 1599.669 kb on + strand, within IKLFDK_07470at 1599.670 kb on - strand, within IKLFDK_07470at 1599.670 kb on - strand, within IKLFDK_07470at 1599.670 kb on - strand, within IKLFDK_07470at 1599.670 kb on - strand, within IKLFDK_07470at 1599.670 kb on - strand, within IKLFDK_07470at 1599.670 kb on - strand, within IKLFDK_07470at 1599.670 kb on - strand, within IKLFDK_07470at 1599.670 kb on - strand, within IKLFDK_07470at 1599.677 kb on - strand, within IKLFDK_07470at 1599.774 kb on + strand, within IKLFDK_07470

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Per-strain Table

Position Strand Gene LocusTag Fraction PA14_MA1_S
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1,596,616 + IKLFDK_07460 0.46 +0.4
1,596,616 + IKLFDK_07460 0.46 -0.6
1,596,616 + IKLFDK_07460 0.46 +1.6
1,596,616 + IKLFDK_07460 0.46 -0.7
1,596,617 - IKLFDK_07460 0.46 -0.1
1,596,617 - IKLFDK_07460 0.46 +0.6
1,596,617 - IKLFDK_07460 0.46 +0.1
1,596,617 - IKLFDK_07460 0.46 +0.2
1,596,617 - IKLFDK_07460 0.46 -0.4
1,596,715 - IKLFDK_07460 0.55 +2.1
1,596,715 - IKLFDK_07460 0.55 +1.1
1,596,715 - IKLFDK_07460 0.55 -0.4
1,596,739 - IKLFDK_07460 0.57 +0.3
1,596,827 - IKLFDK_07460 0.64 +3.6
1,596,827 - IKLFDK_07460 0.64 +0.8
1,596,883 + IKLFDK_07460 0.69 -0.9
1,596,883 + IKLFDK_07460 0.69 -1.5
1,596,883 + IKLFDK_07460 0.69 +1.8
1,596,883 + IKLFDK_07460 0.69 -0.5
1,596,884 - IKLFDK_07460 0.69 +0.1
1,596,884 - IKLFDK_07460 0.69 -0.5
1,596,888 + IKLFDK_07460 0.70 -0.5
1,596,888 + IKLFDK_07460 0.70 +2.3
1,596,888 + IKLFDK_07460 0.70 -0.1
1,596,888 + IKLFDK_07460 0.70 -0.2
1,596,888 + IKLFDK_07460 0.70 -0.8
1,596,889 - IKLFDK_07460 0.70 -0.9
1,596,889 - IKLFDK_07460 0.70 +0.3
1,596,889 - IKLFDK_07460 0.70 +1.1
1,596,889 - IKLFDK_07460 0.70 -0.5
1,596,889 - IKLFDK_07460 0.70 +2.6
1,596,889 - IKLFDK_07460 0.70 +0.5
1,596,889 - IKLFDK_07460 0.70 +0.5
1,596,889 - IKLFDK_07460 0.70 -0.2
1,597,081 + IKLFDK_07460 0.86 -1.3
1,597,081 + IKLFDK_07460 0.86 -0.5
1,597,081 + IKLFDK_07460 0.86 -1.1
1,597,082 - IKLFDK_07460 0.86 +0.1
1,597,105 + IKLFDK_07460 0.88 -2.3
1,597,105 + IKLFDK_07460 0.88 -1.4
1,597,105 + IKLFDK_07460 0.88 +0.2
1,597,105 + IKLFDK_07460 0.88 +1.5
1,597,105 + IKLFDK_07460 0.88 -0.7
1,597,106 - IKLFDK_07460 0.88 +1.1
1,597,106 - IKLFDK_07460 0.88 +0.4
1,597,106 - IKLFDK_07460 0.88 +1.3
1,597,106 - IKLFDK_07460 0.88 +0.1
1,597,106 - IKLFDK_07460 0.88 +0.1
1,597,106 - IKLFDK_07460 0.88 +0.8
1,597,168 + +0.5
1,597,305 + -0.1
1,597,305 + -0.7
1,597,306 - +0.3
1,597,471 - IKLFDK_07465 0.12 -1.6
1,597,573 + IKLFDK_07465 0.19 +0.1
1,597,573 + IKLFDK_07465 0.19 +0.1
1,597,573 + IKLFDK_07465 0.19 +0.1
1,597,573 + IKLFDK_07465 0.19 +0.7
1,597,573 + IKLFDK_07465 0.19 -0.7
1,597,573 + IKLFDK_07465 0.19 -2.1
1,597,574 - IKLFDK_07465 0.19 -1.7
1,597,574 - IKLFDK_07465 0.19 -1.6
1,597,574 - IKLFDK_07465 0.19 +0.3
1,597,574 - IKLFDK_07465 0.19 +0.1
1,597,574 - IKLFDK_07465 0.19 +0.8
1,597,574 - IKLFDK_07465 0.19 +0.8
1,597,574 - IKLFDK_07465 0.19 -1.7
1,597,574 - IKLFDK_07465 0.19 -0.8
1,597,577 + IKLFDK_07465 0.19 +1.2
1,597,577 + IKLFDK_07465 0.19 +0.1
1,597,577 + IKLFDK_07465 0.19 -1.5
1,597,577 + IKLFDK_07465 0.19 -1.0
1,597,577 + IKLFDK_07465 0.19 -0.2
1,597,577 + IKLFDK_07465 0.19 +0.3
1,597,577 + IKLFDK_07465 0.19 -0.1
1,597,577 + IKLFDK_07465 0.19 +1.4
1,597,578 - IKLFDK_07465 0.19 +0.1
1,597,578 - IKLFDK_07465 0.19 +1.3
1,597,578 - IKLFDK_07465 0.19 +1.3
1,597,578 - IKLFDK_07465 0.19 +0.9
1,598,089 - IKLFDK_07465 0.52 +0.1
1,598,190 + IKLFDK_07465 0.58 -0.1
1,598,190 + IKLFDK_07465 0.58 +0.6
1,598,190 + IKLFDK_07465 0.58 -0.9
1,598,190 + IKLFDK_07465 0.58 -0.7
1,598,190 + IKLFDK_07465 0.58 -1.1
1,598,190 + IKLFDK_07465 0.58 +2.6
1,598,190 + IKLFDK_07465 0.58 +0.3
1,598,191 - IKLFDK_07465 0.58 -0.2
1,598,191 - IKLFDK_07465 0.58 +0.8
1,598,191 - IKLFDK_07465 0.58 -0.4
1,598,191 - IKLFDK_07465 0.58 +0.2
1,598,191 - IKLFDK_07465 0.58 +0.6
1,598,191 - IKLFDK_07465 0.58 -0.3
1,598,341 + IKLFDK_07465 0.68 -1.2
1,598,341 + IKLFDK_07465 0.68 +0.1
1,598,342 - IKLFDK_07465 0.68 -0.1
1,598,454 + IKLFDK_07465 0.75 +2.1
1,598,454 + IKLFDK_07465 0.75 +0.6
1,598,454 + IKLFDK_07465 0.75 -0.4
1,598,455 - IKLFDK_07465 0.75 +0.9
1,598,455 - IKLFDK_07465 0.75 -0.1
1,598,535 + IKLFDK_07465 0.80 -2.1
1,598,535 + IKLFDK_07465 0.80 +0.5
1,598,536 - IKLFDK_07465 0.80 +1.5
1,598,536 - IKLFDK_07465 0.80 -1.1
1,598,536 - IKLFDK_07465 0.80 +1.1
1,598,536 - IKLFDK_07465 0.80 +0.8
1,598,550 + IKLFDK_07465 0.81 -0.1
1,598,550 + IKLFDK_07465 0.81 -0.9
1,598,550 + IKLFDK_07465 0.81 +0.8
1,598,550 + IKLFDK_07465 0.81 +0.1
1,598,551 - IKLFDK_07465 0.81 -0.2
1,598,565 + IKLFDK_07465 0.82 +0.5
1,598,748 + +1.4
1,598,748 + +0.5
1,598,748 + +1.1
1,598,748 + +0.6
1,598,749 - +0.0
1,598,749 - -0.5
1,598,749 - +0.6
1,598,752 + +1.1
1,598,752 + -1.9
1,598,752 + -0.1
1,598,752 + +0.2
1,598,752 + -0.3
1,598,752 + -0.6
1,598,753 - +0.6
1,598,753 - -1.7
1,598,753 - +1.5
1,598,753 - -0.1
1,598,753 - +0.5
1,598,753 - +0.8
1,598,869 + -1.1
1,598,870 - -0.7
1,598,937 + +1.3
1,598,937 + +0.6
1,598,941 + -1.6
1,598,941 + -0.8
1,598,942 - +1.4
1,598,942 - -0.8
1,598,942 - +0.1
1,598,942 - +1.1
1,598,942 - +0.5
1,598,942 - -0.5
1,598,979 + -0.8
1,599,008 + +0.4
1,599,008 + +0.7
1,599,008 + +1.1
1,599,008 + -1.9
1,599,008 + -0.4
1,599,008 + -0.9
1,599,008 + -1.0
1,599,008 + +0.5
1,599,008 + -0.5
1,599,009 - +1.3
1,599,009 - +0.6
1,599,009 - -0.3
1,599,237 + -0.9
1,599,237 + +1.6
1,599,237 + -1.1
1,599,237 + -0.8
1,599,238 - +0.1
1,599,238 - +1.4
1,599,238 - -0.1
1,599,238 - +0.1
1,599,264 + -0.1
1,599,264 + +0.8
1,599,264 + +0.8
1,599,264 + -0.9
1,599,264 + -0.3
1,599,265 - -1.1
1,599,265 - +0.3
1,599,265 - -0.7
1,599,538 + IKLFDK_07470 0.12 +0.1
1,599,538 + IKLFDK_07470 0.12 -0.9
1,599,539 - IKLFDK_07470 0.12 -0.7
1,599,576 + IKLFDK_07470 0.13 -0.2
1,599,577 - IKLFDK_07470 0.13 -0.4
1,599,639 + IKLFDK_07470 0.16 +1.3
1,599,639 + IKLFDK_07470 0.16 +1.1
1,599,640 - IKLFDK_07470 0.16 -0.2
1,599,669 + IKLFDK_07470 0.17 +0.2
1,599,669 + IKLFDK_07470 0.17 -0.7
1,599,669 + IKLFDK_07470 0.17 +2.3
1,599,669 + IKLFDK_07470 0.17 -0.3
1,599,670 - IKLFDK_07470 0.17 +0.4
1,599,670 - IKLFDK_07470 0.17 +0.6
1,599,670 - IKLFDK_07470 0.17 +0.3
1,599,670 - IKLFDK_07470 0.17 -0.9
1,599,670 - IKLFDK_07470 0.17 +0.5
1,599,670 - IKLFDK_07470 0.17 -0.9
1,599,670 - IKLFDK_07470 0.17 +0.8
1,599,670 - IKLFDK_07470 0.17 -0.6
1,599,677 - IKLFDK_07470 0.17 -0.4
1,599,774 + IKLFDK_07470 0.20 -0.4

Or see this region's nucleotide sequence