Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS02075

Experiment: Bas44

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECOLIN_RS02065 and ECOLIN_RS02075 are separated by 875 nucleotidesECOLIN_RS02075 and ECOLIN_RS02080 are separated by 41 nucleotides ECOLIN_RS02065: ECOLIN_RS02065 - choline BCCT transporter BetT, at 418,430 to 420,463 _RS02065 ECOLIN_RS02075: ECOLIN_RS02075 - DNA-binding transcriptional activator/c-di-GMP phosphodiesterase PdeL, at 421,339 to 422,427 _RS02075 ECOLIN_RS02080: ECOLIN_RS02080 - LysR substrate-binding domain-containing protein, at 422,469 to 423,401 _RS02080 Position (kb) 421 422 423Strain fitness (log2 ratio) -1 0 1at 420.531 kb on - strandat 421.012 kb on + strandat 421.206 kb on + strandat 421.236 kb on + strandat 421.236 kb on + strandat 421.236 kb on + strandat 421.236 kb on + strandat 421.271 kb on + strandat 421.815 kb on + strand, within ECOLIN_RS02075at 421.815 kb on + strand, within ECOLIN_RS02075at 422.003 kb on + strand, within ECOLIN_RS02075at 422.082 kb on - strand, within ECOLIN_RS02075at 422.140 kb on + strand, within ECOLIN_RS02075at 422.268 kb on + strand, within ECOLIN_RS02075at 422.509 kb on - strandat 423.002 kb on - strand, within ECOLIN_RS02080

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas44
remove
420,531 - +0.7
421,012 + +0.1
421,206 + +0.2
421,236 + -1.0
421,236 + +0.3
421,236 + -0.5
421,236 + +0.0
421,271 + -0.5
421,815 + ECOLIN_RS02075 0.44 +1.3
421,815 + ECOLIN_RS02075 0.44 -0.1
422,003 + ECOLIN_RS02075 0.61 +0.2
422,082 - ECOLIN_RS02075 0.68 -1.3
422,140 + ECOLIN_RS02075 0.74 -0.2
422,268 + ECOLIN_RS02075 0.85 +0.3
422,509 - +0.3
423,002 - ECOLIN_RS02080 0.57 +0.4

Or see this region's nucleotide sequence