Experiment: Bas44
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS22080 and ECOLIN_RS22085 are separated by 12 nucleotides ECOLIN_RS22085 and ECOLIN_RS22090 are separated by 16 nucleotides ECOLIN_RS22090 and ECOLIN_RS22095 are separated by 24 nucleotides ECOLIN_RS22095 and ECOLIN_RS22100 overlap by 11 nucleotides
ECOLIN_RS22080: ECOLIN_RS22080 - tripartite tricarboxylate transporter permease, at 4,435,495 to 4,436,985
_RS22080
ECOLIN_RS22085: ECOLIN_RS22085 - tripartite tricarboxylate transporter TctB family protein, at 4,436,998 to 4,437,504
_RS22085
ECOLIN_RS22090: ECOLIN_RS22090 - tripartite tricarboxylate transporter substrate binding protein, at 4,437,521 to 4,438,495
_RS22090
ECOLIN_RS22095: ECOLIN_RS22095 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 4,438,520 to 4,439,149
_RS22095
ECOLIN_RS22100: ECOLIN_RS22100 - 2-dehydro-3-deoxygalactonokinase, at 4,439,139 to 4,440,143
_RS22100
Position (kb) 4437
4438
4439 Strain fitness (log2 ratio) -1
0
1 at 4436.629 kb on - strand, within ECOLIN_RS22080 at 4436.754 kb on + strand, within ECOLIN_RS22080 at 4436.754 kb on + strand, within ECOLIN_RS22080 at 4437.127 kb on - strand, within ECOLIN_RS22085 at 4437.150 kb on + strand, within ECOLIN_RS22085 at 4437.153 kb on + strand, within ECOLIN_RS22085 at 4437.186 kb on + strand, within ECOLIN_RS22085 at 4437.187 kb on - strand, within ECOLIN_RS22085 at 4437.187 kb on - strand, within ECOLIN_RS22085 at 4437.187 kb on - strand, within ECOLIN_RS22085 at 4437.187 kb on - strand, within ECOLIN_RS22085 at 4437.188 kb on + strand, within ECOLIN_RS22085 at 4437.189 kb on - strand, within ECOLIN_RS22085 at 4437.326 kb on + strand, within ECOLIN_RS22085 at 4437.326 kb on + strand, within ECOLIN_RS22085 at 4437.327 kb on - strand, within ECOLIN_RS22085 at 4437.470 kb on - strand at 4437.562 kb on - strand at 4437.615 kb on + strand at 4437.616 kb on - strand at 4437.616 kb on - strand at 4437.616 kb on - strand at 4437.616 kb on - strand at 4437.860 kb on - strand, within ECOLIN_RS22090 at 4437.893 kb on - strand, within ECOLIN_RS22090 at 4437.913 kb on + strand, within ECOLIN_RS22090 at 4437.913 kb on + strand, within ECOLIN_RS22090 at 4438.000 kb on + strand, within ECOLIN_RS22090 at 4438.000 kb on + strand, within ECOLIN_RS22090 at 4438.001 kb on - strand, within ECOLIN_RS22090 at 4438.001 kb on - strand, within ECOLIN_RS22090 at 4438.019 kb on - strand, within ECOLIN_RS22090 at 4438.029 kb on - strand, within ECOLIN_RS22090 at 4438.054 kb on - strand, within ECOLIN_RS22090 at 4438.061 kb on - strand, within ECOLIN_RS22090 at 4438.072 kb on - strand, within ECOLIN_RS22090 at 4438.072 kb on - strand, within ECOLIN_RS22090 at 4438.142 kb on - strand, within ECOLIN_RS22090 at 4438.157 kb on - strand, within ECOLIN_RS22090 at 4438.157 kb on - strand, within ECOLIN_RS22090 at 4438.279 kb on + strand, within ECOLIN_RS22090 at 4438.279 kb on + strand, within ECOLIN_RS22090 at 4438.304 kb on + strand, within ECOLIN_RS22090 at 4438.304 kb on + strand, within ECOLIN_RS22090 at 4438.379 kb on + strand, within ECOLIN_RS22090 at 4438.416 kb on - strand at 4438.452 kb on - strand at 4438.480 kb on + strand at 4438.480 kb on + strand at 4438.480 kb on + strand at 4438.605 kb on - strand, within ECOLIN_RS22095 at 4438.742 kb on - strand, within ECOLIN_RS22095 at 4438.774 kb on + strand, within ECOLIN_RS22095 at 4438.833 kb on + strand, within ECOLIN_RS22095 at 4438.833 kb on + strand, within ECOLIN_RS22095 at 4438.834 kb on - strand, within ECOLIN_RS22095 at 4438.837 kb on + strand, within ECOLIN_RS22095 at 4438.892 kb on - strand, within ECOLIN_RS22095 at 4438.990 kb on + strand, within ECOLIN_RS22095 at 4438.990 kb on + strand, within ECOLIN_RS22095 at 4438.990 kb on + strand, within ECOLIN_RS22095 at 4438.997 kb on - strand, within ECOLIN_RS22095 at 4438.997 kb on - strand, within ECOLIN_RS22095 at 4439.023 kb on + strand, within ECOLIN_RS22095 at 4439.137 kb on + strand at 4439.138 kb on - strand at 4439.138 kb on - strand at 4439.141 kb on - strand at 4439.153 kb on + strand at 4439.154 kb on - strand at 4439.154 kb on - strand at 4439.154 kb on - strand at 4439.205 kb on + strand at 4439.239 kb on - strand at 4439.239 kb on - strand at 4439.239 kb on - strand at 4439.364 kb on + strand, within ECOLIN_RS22100 at 4439.364 kb on + strand, within ECOLIN_RS22100 at 4439.364 kb on + strand, within ECOLIN_RS22100 at 4439.365 kb on - strand, within ECOLIN_RS22100 at 4439.365 kb on - strand, within ECOLIN_RS22100 at 4439.395 kb on + strand, within ECOLIN_RS22100 at 4439.417 kb on + strand, within ECOLIN_RS22100 at 4439.467 kb on - strand, within ECOLIN_RS22100 at 4439.467 kb on - strand, within ECOLIN_RS22100
Per-strain Table
Position Strand Gene LocusTag Fraction Bas44 remove 4,436,629 - ECOLIN_RS22080 0.76 +0.2 4,436,754 + ECOLIN_RS22080 0.84 +0.3 4,436,754 + ECOLIN_RS22080 0.84 +0.2 4,437,127 - ECOLIN_RS22085 0.25 -0.1 4,437,150 + ECOLIN_RS22085 0.30 -0.9 4,437,153 + ECOLIN_RS22085 0.31 +0.0 4,437,186 + ECOLIN_RS22085 0.37 -0.0 4,437,187 - ECOLIN_RS22085 0.37 +0.4 4,437,187 - ECOLIN_RS22085 0.37 +0.2 4,437,187 - ECOLIN_RS22085 0.37 -0.1 4,437,187 - ECOLIN_RS22085 0.37 +0.1 4,437,188 + ECOLIN_RS22085 0.37 -0.2 4,437,189 - ECOLIN_RS22085 0.38 +0.6 4,437,326 + ECOLIN_RS22085 0.65 +0.2 4,437,326 + ECOLIN_RS22085 0.65 +0.3 4,437,327 - ECOLIN_RS22085 0.65 +0.2 4,437,470 - +0.1 4,437,562 - +0.1 4,437,615 + -0.3 4,437,616 - +0.3 4,437,616 - -0.1 4,437,616 - +0.3 4,437,616 - +0.1 4,437,860 - ECOLIN_RS22090 0.35 -0.2 4,437,893 - ECOLIN_RS22090 0.38 +0.3 4,437,913 + ECOLIN_RS22090 0.40 +0.2 4,437,913 + ECOLIN_RS22090 0.40 +0.3 4,438,000 + ECOLIN_RS22090 0.49 -0.1 4,438,000 + ECOLIN_RS22090 0.49 -0.3 4,438,001 - ECOLIN_RS22090 0.49 -0.1 4,438,001 - ECOLIN_RS22090 0.49 -0.2 4,438,019 - ECOLIN_RS22090 0.51 -0.7 4,438,029 - ECOLIN_RS22090 0.52 +0.2 4,438,054 - ECOLIN_RS22090 0.55 -0.4 4,438,061 - ECOLIN_RS22090 0.55 +0.2 4,438,072 - ECOLIN_RS22090 0.57 +0.2 4,438,072 - ECOLIN_RS22090 0.57 +0.3 4,438,142 - ECOLIN_RS22090 0.64 -0.3 4,438,157 - ECOLIN_RS22090 0.65 -0.1 4,438,157 - ECOLIN_RS22090 0.65 +0.2 4,438,279 + ECOLIN_RS22090 0.78 -0.2 4,438,279 + ECOLIN_RS22090 0.78 +0.1 4,438,304 + ECOLIN_RS22090 0.80 -0.1 4,438,304 + ECOLIN_RS22090 0.80 -0.6 4,438,379 + ECOLIN_RS22090 0.88 +0.1 4,438,416 - +0.2 4,438,452 - -0.3 4,438,480 + -0.1 4,438,480 + +0.1 4,438,480 + -0.1 4,438,605 - ECOLIN_RS22095 0.13 -0.2 4,438,742 - ECOLIN_RS22095 0.35 -0.2 4,438,774 + ECOLIN_RS22095 0.40 +0.2 4,438,833 + ECOLIN_RS22095 0.50 -1.4 4,438,833 + ECOLIN_RS22095 0.50 -0.1 4,438,834 - ECOLIN_RS22095 0.50 +0.2 4,438,837 + ECOLIN_RS22095 0.50 +0.0 4,438,892 - ECOLIN_RS22095 0.59 +0.3 4,438,990 + ECOLIN_RS22095 0.75 -0.2 4,438,990 + ECOLIN_RS22095 0.75 +0.1 4,438,990 + ECOLIN_RS22095 0.75 +0.3 4,438,997 - ECOLIN_RS22095 0.76 +0.1 4,438,997 - ECOLIN_RS22095 0.76 +0.1 4,439,023 + ECOLIN_RS22095 0.80 +0.8 4,439,137 + +0.2 4,439,138 - +0.3 4,439,138 - +0.5 4,439,141 - +0.1 4,439,153 + +0.1 4,439,154 - +0.4 4,439,154 - +0.3 4,439,154 - +0.1 4,439,205 + +0.4 4,439,239 - +0.4 4,439,239 - +0.4 4,439,239 - -0.1 4,439,364 + ECOLIN_RS22100 0.22 +0.0 4,439,364 + ECOLIN_RS22100 0.22 +0.3 4,439,364 + ECOLIN_RS22100 0.22 +0.3 4,439,365 - ECOLIN_RS22100 0.22 -0.4 4,439,365 - ECOLIN_RS22100 0.22 +0.2 4,439,395 + ECOLIN_RS22100 0.25 +0.2 4,439,417 + ECOLIN_RS22100 0.28 +0.3 4,439,467 - ECOLIN_RS22100 0.33 +0.1 4,439,467 - ECOLIN_RS22100 0.33 -0.8
Or see this region's nucleotide sequence