Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS07785

Experiment: Bas44

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS07780 and ECOLIN_RS07785 are separated by 148 nucleotidesECOLIN_RS07785 and ECOLIN_RS07790 overlap by 1 nucleotides ECOLIN_RS07780: ECOLIN_RS07780 - TetR/AcrR family transcriptional regulator, at 1,521,297 to 1,521,863 _RS07780 ECOLIN_RS07785: ECOLIN_RS07785 - efflux RND transporter periplasmic adaptor subunit, at 1,522,012 to 1,523,133 _RS07785 ECOLIN_RS07790: ECOLIN_RS07790 - efflux RND transporter permease subunit, at 1,523,133 to 1,526,240 _RS07790 Position (kb) 1522 1523 1524Strain fitness (log2 ratio) -1 0 1 2 3at 1521.245 kb on + strandat 1521.692 kb on + strand, within ECOLIN_RS07780at 1521.692 kb on + strand, within ECOLIN_RS07780at 1522.268 kb on - strand, within ECOLIN_RS07785at 1522.655 kb on + strand, within ECOLIN_RS07785at 1522.735 kb on + strand, within ECOLIN_RS07785at 1523.403 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas44
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1,521,245 + +0.6
1,521,692 + ECOLIN_RS07780 0.70 -0.5
1,521,692 + ECOLIN_RS07780 0.70 +0.4
1,522,268 - ECOLIN_RS07785 0.23 +2.9
1,522,655 + ECOLIN_RS07785 0.57 +0.5
1,522,735 + ECOLIN_RS07785 0.64 +0.3
1,523,403 - -0.2

Or see this region's nucleotide sequence