Experiment: K20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS32255 and ECOLIN_RS01880 are separated by 262 nucleotides ECOLIN_RS01880 and ECOLIN_RS27700 are separated by 70 nucleotides ECOLIN_RS27700 and ECOLIN_RS01885 are separated by 11 nucleotides ECOLIN_RS01885 and ECOLIN_RS01890 are separated by 306 nucleotides
ECOLIN_RS32255: ECOLIN_RS32255 - hypothetical protein, at 376,190 to 376,327
_RS32255
ECOLIN_RS01880: ECOLIN_RS01880 - YagU family protein, at 376,590 to 377,204
_RS01880
ECOLIN_RS27700: ECOLIN_RS27700 - tail fiber assembly protein, at 377,275 to 377,441
_RS27700
ECOLIN_RS01885: ECOLIN_RS01885 - YkgJ family cysteine cluster protein, at 377,453 to 377,782
_RS01885
ECOLIN_RS01890: ECOLIN_RS01890 - fimbrial chaperone EcpE, at 378,089 to 378,799
_RS01890
Position (kb) 377
378 Strain fitness (log2 ratio) -2
-1
0
1 at 376.562 kb on - strand at 376.597 kb on + strand at 376.886 kb on + strand, within ECOLIN_RS01880 at 376.957 kb on + strand, within ECOLIN_RS01880 at 377.198 kb on + strand at 377.232 kb on + strand at 377.254 kb on - strand at 377.306 kb on + strand, within ECOLIN_RS27700 at 377.563 kb on - strand, within ECOLIN_RS01885 at 377.782 kb on + strand at 377.793 kb on + strand at 378.090 kb on + strand at 378.159 kb on + strand at 378.212 kb on + strand, within ECOLIN_RS01890
Per-strain Table
Position Strand Gene LocusTag Fraction K20 remove 376,562 - -0.3 376,597 + -0.2 376,886 + ECOLIN_RS01880 0.48 -0.8 376,957 + ECOLIN_RS01880 0.60 +1.1 377,198 + +0.1 377,232 + -1.4 377,254 - -1.2 377,306 + ECOLIN_RS27700 0.19 +0.5 377,563 - ECOLIN_RS01885 0.33 +0.2 377,782 + -0.4 377,793 + -0.2 378,090 + +0.3 378,159 + -2.3 378,212 + ECOLIN_RS01890 0.17 +0.8
Or see this region's nucleotide sequence