Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS33360

Experiment: K20

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS05400 and ECOLIN_RS33360 are separated by 84 nucleotidesECOLIN_RS33360 and ECOLIN_RS33365 overlap by 2 nucleotidesECOLIN_RS33365 and ECOLIN_RS33370 are separated by 21 nucleotides ECOLIN_RS05400: ECOLIN_RS05400 - PatB family C-S lyase, at 1,111,030 to 1,112,193 _RS05400 ECOLIN_RS33360: ECOLIN_RS33360 - class II fructose-bisphosphate aldolase, at 1,112,278 to 1,112,427 _RS33360 ECOLIN_RS33365: ECOLIN_RS33365 - class II fructose-bisphosphate aldolase, at 1,112,426 to 1,112,596 _RS33365 ECOLIN_RS33370: ECOLIN_RS33370 - class II D-tagatose-bisphosphate aldolase, non-catalytic subunit, at 1,112,618 to 1,113,241 _RS33370 Position (kb) 1112 1113Strain fitness (log2 ratio) -1 0 1at 1112.409 kb on - strand, within ECOLIN_RS33360

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Per-strain Table

Position Strand Gene LocusTag Fraction K20
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1,112,409 - ECOLIN_RS33360 0.87 +0.3

Or see this region's nucleotide sequence