Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS11570

Experiment: K20

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS11565 and ECOLIN_RS11570 are separated by 3 nucleotidesECOLIN_RS11570 and ECOLIN_RS11575 are separated by 29 nucleotidesECOLIN_RS11575 and ECOLIN_RS11580 are separated by 9 nucleotides ECOLIN_RS11565: ECOLIN_RS11565 - colibactin biosynthesis dehydrogenase ClbF, at 2,274,609 to 2,275,739 _RS11565 ECOLIN_RS11570: ECOLIN_RS11570 - colibactin biosynthesis aminomalonyl-acyl carrier protein ClbE, at 2,275,743 to 2,275,991 _RS11570 ECOLIN_RS11575: ECOLIN_RS11575 - colibactin biosynthesis dehydrogenase ClbD, at 2,276,021 to 2,276,890 _RS11575 ECOLIN_RS11580: ECOLIN_RS11580 - colibactin polyketide synthase ClbC, at 2,276,900 to 2,279,500 _RS11580 Position (kb) 2275 2276Strain fitness (log2 ratio) -1 0 1at 2275.853 kb on + strand, within ECOLIN_RS11570

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Per-strain Table

Position Strand Gene LocusTag Fraction K20
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2,275,853 + ECOLIN_RS11570 0.44 +0.4

Or see this region's nucleotide sequence