Experiment: Bas22
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS24265 and ECOLIN_RS24270 are separated by 90 nucleotides ECOLIN_RS24270 and ECOLIN_RS24275 are separated by 126 nucleotides ECOLIN_RS24275 and ECOLIN_RS24280 are separated by 18 nucleotides
ECOLIN_RS24265: ECOLIN_RS24265 - ribonuclease R, at 4,879,672 to 4,882,113
_RS24265
ECOLIN_RS24270: ECOLIN_RS24270 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 4,882,204 to 4,882,935
_RS24270
ECOLIN_RS24275: ECOLIN_RS24275 - DUF2170 family protein, at 4,883,062 to 4,883,463
_RS24275
ECOLIN_RS24280: ECOLIN_RS24280 - PspA/IM30 family protein, at 4,883,482 to 4,884,180
_RS24280
Position (kb) 4882
4883 Strain fitness (log2 ratio) -1
0
1 at 4881.370 kb on - strand, within ECOLIN_RS24265 at 4881.481 kb on + strand, within ECOLIN_RS24265 at 4881.713 kb on - strand, within ECOLIN_RS24265 at 4882.203 kb on - strand at 4882.511 kb on + strand, within ECOLIN_RS24270 at 4882.689 kb on + strand, within ECOLIN_RS24270 at 4882.750 kb on + strand, within ECOLIN_RS24270 at 4882.933 kb on + strand at 4882.989 kb on - strand at 4883.505 kb on + strand at 4883.505 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas22 remove 4,881,370 - ECOLIN_RS24265 0.70 +1.4 4,881,481 + ECOLIN_RS24265 0.74 -0.7 4,881,713 - ECOLIN_RS24265 0.84 -0.8 4,882,203 - +0.1 4,882,511 + ECOLIN_RS24270 0.42 +0.8 4,882,689 + ECOLIN_RS24270 0.66 -0.8 4,882,750 + ECOLIN_RS24270 0.75 +1.4 4,882,933 + -0.8 4,882,989 - +0.3 4,883,505 + -0.4 4,883,505 + -0.9
Or see this region's nucleotide sequence