Experiment: Bas22
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS02540 and ECOLIN_RS02545 overlap by 1 nucleotides ECOLIN_RS02545 and ECOLIN_RS02550 are separated by 205 nucleotides ECOLIN_RS02550 and ECOLIN_RS02555 are separated by 53 nucleotides ECOLIN_RS02555 and ECOLIN_RS02560 overlap by 38 nucleotides
ECOLIN_RS02540: ECOLIN_RS02540 - (2E,6E)-farnesyl diphosphate synthase, at 519,508 to 520,407
_RS02540
ECOLIN_RS02545: ECOLIN_RS02545 - exodeoxyribonuclease VII small subunit, at 520,407 to 520,649
_RS02545
ECOLIN_RS02550: ECOLIN_RS02550 - tRNA uracil 4-sulfurtransferase ThiI, at 520,855 to 522,303
_RS02550
ECOLIN_RS02555: ECOLIN_RS02555 - protein deglycase YajL, at 522,357 to 522,947
_RS02555
ECOLIN_RS02560: ECOLIN_RS02560 - 2-dehydropantoate 2-reductase, at 522,910 to 523,821
_RS02560
Position (kb) 520
521
522
523 Strain fitness (log2 ratio) -1
0
1 at 520.561 kb on - strand, within ECOLIN_RS02545 at 520.729 kb on - strand at 520.827 kb on + strand at 520.827 kb on + strand at 520.963 kb on + strand at 521.259 kb on + strand, within ECOLIN_RS02550 at 521.259 kb on + strand, within ECOLIN_RS02550 at 521.358 kb on + strand, within ECOLIN_RS02550 at 521.581 kb on - strand, within ECOLIN_RS02550 at 521.652 kb on + strand, within ECOLIN_RS02550 at 521.652 kb on + strand, within ECOLIN_RS02550 at 522.276 kb on + strand at 522.292 kb on + strand at 523.159 kb on - strand, within ECOLIN_RS02560 at 523.159 kb on - strand, within ECOLIN_RS02560 at 523.201 kb on + strand, within ECOLIN_RS02560
Per-strain Table
Position Strand Gene LocusTag Fraction Bas22 remove 520,561 - ECOLIN_RS02545 0.63 -1.6 520,729 - +0.8 520,827 + +0.1 520,827 + -1.0 520,963 + +1.7 521,259 + ECOLIN_RS02550 0.28 +0.3 521,259 + ECOLIN_RS02550 0.28 +0.2 521,358 + ECOLIN_RS02550 0.35 +0.4 521,581 - ECOLIN_RS02550 0.50 +0.9 521,652 + ECOLIN_RS02550 0.55 -0.1 521,652 + ECOLIN_RS02550 0.55 +0.8 522,276 + +0.4 522,292 + +1.7 523,159 - ECOLIN_RS02560 0.27 -0.8 523,159 - ECOLIN_RS02560 0.27 +1.2 523,201 + ECOLIN_RS02560 0.32 +0.1
Or see this region's nucleotide sequence