Experiment: Bas22
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS22525 and ECOLIN_RS22530 are separated by 148 nucleotides ECOLIN_RS22530 and ECOLIN_RS22535 are separated by 105 nucleotides ECOLIN_RS22535 and ECOLIN_RS22540 overlap by 4 nucleotides ECOLIN_RS22540 and ECOLIN_RS22545 are separated by 149 nucleotides
ECOLIN_RS22525: ECOLIN_RS22525 - 2-keto-3-deoxygluconate transporter, at 4,524,487 to 4,525,470
_RS22525
ECOLIN_RS22530: ECOLIN_RS22530 - 6-hydroxyaminopurine reductase, at 4,525,619 to 4,526,293
_RS22530
ECOLIN_RS22535: ECOLIN_RS22535 - envelope stress sensor histidine kinase CpxA, at 4,526,399 to 4,527,772
_RS22535
ECOLIN_RS22540: ECOLIN_RS22540 - envelope stress response regulator transcription factor CpxR, at 4,527,769 to 4,528,467
_RS22540
ECOLIN_RS22545: ECOLIN_RS22545 - cell-envelope stress modulator CpxP, at 4,528,617 to 4,529,117
_RS22545
Position (kb) 4526
4527
4528 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4525.576 kb on + strand at 4525.576 kb on + strand at 4525.577 kb on - strand at 4525.577 kb on - strand at 4525.577 kb on - strand at 4525.581 kb on - strand at 4525.588 kb on - strand at 4525.638 kb on + strand at 4525.638 kb on + strand at 4525.638 kb on + strand at 4525.638 kb on + strand at 4525.639 kb on - strand at 4525.639 kb on - strand at 4525.639 kb on - strand at 4525.640 kb on + strand at 4525.641 kb on - strand at 4525.641 kb on - strand at 4525.662 kb on - strand at 4525.662 kb on - strand at 4525.811 kb on + strand, within ECOLIN_RS22530 at 4525.811 kb on + strand, within ECOLIN_RS22530 at 4525.906 kb on + strand, within ECOLIN_RS22530 at 4525.907 kb on - strand, within ECOLIN_RS22530 at 4525.914 kb on - strand, within ECOLIN_RS22530 at 4525.916 kb on - strand, within ECOLIN_RS22530 at 4525.924 kb on + strand, within ECOLIN_RS22530 at 4525.924 kb on + strand, within ECOLIN_RS22530 at 4525.947 kb on + strand, within ECOLIN_RS22530 at 4525.948 kb on - strand, within ECOLIN_RS22530 at 4525.948 kb on - strand, within ECOLIN_RS22530 at 4525.981 kb on + strand, within ECOLIN_RS22530 at 4526.014 kb on - strand, within ECOLIN_RS22530 at 4526.055 kb on - strand, within ECOLIN_RS22530 at 4526.055 kb on - strand, within ECOLIN_RS22530 at 4526.055 kb on - strand, within ECOLIN_RS22530 at 4526.055 kb on - strand, within ECOLIN_RS22530 at 4526.056 kb on + strand, within ECOLIN_RS22530 at 4526.061 kb on + strand, within ECOLIN_RS22530 at 4526.062 kb on - strand, within ECOLIN_RS22530 at 4526.181 kb on - strand, within ECOLIN_RS22530 at 4526.410 kb on + strand at 4526.410 kb on + strand at 4526.412 kb on + strand at 4526.412 kb on + strand at 4526.413 kb on - strand at 4526.413 kb on - strand at 4527.048 kb on - strand, within ECOLIN_RS22535 at 4527.159 kb on - strand, within ECOLIN_RS22535 at 4527.356 kb on - strand, within ECOLIN_RS22535 at 4527.455 kb on - strand, within ECOLIN_RS22535 at 4528.313 kb on - strand, within ECOLIN_RS22540 at 4528.525 kb on + strand at 4528.525 kb on + strand at 4528.526 kb on - strand at 4528.526 kb on - strand at 4528.624 kb on + strand at 4528.624 kb on + strand at 4528.624 kb on + strand at 4528.724 kb on + strand, within ECOLIN_RS22545 at 4528.749 kb on - strand, within ECOLIN_RS22545 at 4528.749 kb on - strand, within ECOLIN_RS22545 at 4528.749 kb on - strand, within ECOLIN_RS22545
Per-strain Table
Position Strand Gene LocusTag Fraction Bas22 remove 4,525,576 + -0.5 4,525,576 + +0.8 4,525,577 - +0.1 4,525,577 - +0.2 4,525,577 - +1.1 4,525,581 - +0.0 4,525,588 - -0.1 4,525,638 + +0.4 4,525,638 + -0.2 4,525,638 + +0.1 4,525,638 + +0.0 4,525,639 - +0.1 4,525,639 - +0.2 4,525,639 - -1.0 4,525,640 + -0.3 4,525,641 - -0.1 4,525,641 - +0.2 4,525,662 - +0.4 4,525,662 - -0.2 4,525,811 + ECOLIN_RS22530 0.28 -0.0 4,525,811 + ECOLIN_RS22530 0.28 +1.1 4,525,906 + ECOLIN_RS22530 0.43 -0.6 4,525,907 - ECOLIN_RS22530 0.43 -0.5 4,525,914 - ECOLIN_RS22530 0.44 -0.6 4,525,916 - ECOLIN_RS22530 0.44 -0.1 4,525,924 + ECOLIN_RS22530 0.45 +0.2 4,525,924 + ECOLIN_RS22530 0.45 +0.1 4,525,947 + ECOLIN_RS22530 0.49 +0.2 4,525,948 - ECOLIN_RS22530 0.49 +2.1 4,525,948 - ECOLIN_RS22530 0.49 -0.5 4,525,981 + ECOLIN_RS22530 0.54 -0.2 4,526,014 - ECOLIN_RS22530 0.59 -0.4 4,526,055 - ECOLIN_RS22530 0.65 +0.6 4,526,055 - ECOLIN_RS22530 0.65 +0.4 4,526,055 - ECOLIN_RS22530 0.65 +0.1 4,526,055 - ECOLIN_RS22530 0.65 -0.2 4,526,056 + ECOLIN_RS22530 0.65 -0.3 4,526,061 + ECOLIN_RS22530 0.65 -0.0 4,526,062 - ECOLIN_RS22530 0.66 -0.7 4,526,181 - ECOLIN_RS22530 0.83 -0.3 4,526,410 + -4.3 4,526,410 + -0.1 4,526,412 + -0.1 4,526,412 + -0.1 4,526,413 - -0.5 4,526,413 - -0.3 4,527,048 - ECOLIN_RS22535 0.47 -0.8 4,527,159 - ECOLIN_RS22535 0.55 -1.1 4,527,356 - ECOLIN_RS22535 0.70 +0.5 4,527,455 - ECOLIN_RS22535 0.77 +0.8 4,528,313 - ECOLIN_RS22540 0.78 +1.3 4,528,525 + +0.4 4,528,525 + -0.4 4,528,526 - -0.0 4,528,526 - +0.2 4,528,624 + -0.3 4,528,624 + +0.1 4,528,624 + +0.2 4,528,724 + ECOLIN_RS22545 0.21 -0.7 4,528,749 - ECOLIN_RS22545 0.26 -0.3 4,528,749 - ECOLIN_RS22545 0.26 +0.2 4,528,749 - ECOLIN_RS22545 0.26 +0.2
Or see this region's nucleotide sequence