Experiment: Bas22
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS13355 and ECOLIN_RS13360 are separated by 135 nucleotides ECOLIN_RS13360 and ECOLIN_RS13365 are separated by 56 nucleotides ECOLIN_RS13365 and ECOLIN_RS13370 are separated by 20 nucleotides
ECOLIN_RS13355: ECOLIN_RS13355 - glutathione transferase, at 2,674,405 to 2,675,049
_RS13355
ECOLIN_RS13360: ECOLIN_RS13360 - GSH-dependent disulfide bond oxidoreductase, at 2,675,185 to 2,675,832
_RS13360
ECOLIN_RS13365: ECOLIN_RS13365 - dihydroneopterin triphosphate 2'-epimerase, at 2,675,889 to 2,676,251
_RS13365
ECOLIN_RS13370: ECOLIN_RS13370 - TIGR01777 family oxidoreductase, at 2,676,272 to 2,677,165
_RS13370
Position (kb) 2675
2676
2677 Strain fitness (log2 ratio) -1
0
1
2 at 2675.144 kb on + strand at 2675.271 kb on - strand, within ECOLIN_RS13360 at 2675.796 kb on - strand at 2676.080 kb on + strand, within ECOLIN_RS13365 at 2676.171 kb on + strand, within ECOLIN_RS13365 at 2676.634 kb on - strand, within ECOLIN_RS13370 at 2676.871 kb on + strand, within ECOLIN_RS13370 at 2677.213 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas22 remove 2,675,144 + +0.7 2,675,271 - ECOLIN_RS13360 0.13 +2.1 2,675,796 - -0.0 2,676,080 + ECOLIN_RS13365 0.53 +0.7 2,676,171 + ECOLIN_RS13365 0.78 -1.1 2,676,634 - ECOLIN_RS13370 0.40 -0.0 2,676,871 + ECOLIN_RS13370 0.67 -0.1 2,677,213 - -0.2
Or see this region's nucleotide sequence