Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS11840

Experiment: Bas22

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS11830 and ECOLIN_RS11835 are separated by 135 nucleotidesECOLIN_RS11835 and ECOLIN_RS11840 are separated by 15 nucleotidesECOLIN_RS11840 and ECOLIN_RS11845 are separated by 220 nucleotides ECOLIN_RS11830: ECOLIN_RS11830 - patatin-like phospholipase family protein, at 2,334,812 to 2,335,882 _RS11830 ECOLIN_RS11835: ECOLIN_RS11835 - hypothetical protein, at 2,336,018 to 2,336,695 _RS11835 ECOLIN_RS11840: ECOLIN_RS11840 - hypothetical protein, at 2,336,711 to 2,337,121 _RS11840 ECOLIN_RS11845: ECOLIN_RS11845 - DUF932 domain-containing protein, at 2,337,342 to 2,338,163 _RS11845 Position (kb) 2336 2337 2338Strain fitness (log2 ratio) -1 0 1at 2336.558 kb on + strand, within ECOLIN_RS11835at 2336.559 kb on - strand, within ECOLIN_RS11835at 2337.165 kb on + strandat 2337.474 kb on + strand, within ECOLIN_RS11845

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas22
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2,336,558 + ECOLIN_RS11835 0.80 -1.5
2,336,559 - ECOLIN_RS11835 0.80 -0.1
2,337,165 + -0.1
2,337,474 + ECOLIN_RS11845 0.16 -0.2

Or see this region's nucleotide sequence