Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS06965

Experiment: Bas22

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS06955 and ECOLIN_RS06960 overlap by 4 nucleotidesECOLIN_RS06960 and ECOLIN_RS06965 are separated by 60 nucleotidesECOLIN_RS06965 and ECOLIN_RS06970 are separated by 58 nucleotides ECOLIN_RS06955: ECOLIN_RS06955 - C40 family peptidase, at 1,364,987 to 1,365,730 _RS06955 ECOLIN_RS06960: ECOLIN_RS06960 - tail assembly protein, at 1,365,727 to 1,366,299 _RS06960 ECOLIN_RS06965: ECOLIN_RS06965 - host specificity protein J, at 1,366,360 to 1,369,842 _RS06965 ECOLIN_RS06970: ECOLIN_RS06970 - prophage tail fiber N-terminal domain-containing protein, at 1,369,901 to 1,371,961 _RS06970 Position (kb) 1366 1367 1368 1369 1370Strain fitness (log2 ratio) -1 0 1at 1367.816 kb on - strand, within ECOLIN_RS06965at 1368.262 kb on + strand, within ECOLIN_RS06965at 1369.750 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas22
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1,367,816 - ECOLIN_RS06965 0.42 +0.8
1,368,262 + ECOLIN_RS06965 0.55 +0.1
1,369,750 + +0.8

Or see this region's nucleotide sequence