Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS05395

Experiment: Bas22

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS05385 and ECOLIN_RS32270 are separated by 80 nucleotidesECOLIN_RS32270 and ECOLIN_RS05395 are separated by 66 nucleotidesECOLIN_RS05395 and ECOLIN_RS05400 are separated by 25 nucleotides ECOLIN_RS05385: ECOLIN_RS05385 - inovirus-type Gp2 protein, at 1,108,045 to 1,108,638 _RS05385 ECOLIN_RS32270: ECOLIN_RS32270 - hypothetical protein, at 1,108,719 to 1,109,048 _RS32270 ECOLIN_RS05395: ECOLIN_RS05395 - enterotoxin, at 1,109,115 to 1,111,004 _RS05395 ECOLIN_RS05400: ECOLIN_RS05400 - PatB family C-S lyase, at 1,111,030 to 1,112,193 _RS05400 Position (kb) 1109 1110 1111 1112Strain fitness (log2 ratio) -1 0 1at 1109.101 kb on - strandat 1109.726 kb on + strand, within ECOLIN_RS05395at 1109.727 kb on - strand, within ECOLIN_RS05395at 1111.019 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas22
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1,109,101 - +0.3
1,109,726 + ECOLIN_RS05395 0.32 +0.7
1,109,727 - ECOLIN_RS05395 0.32 +0.3
1,111,019 + -0.2

Or see this region's nucleotide sequence